Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_G08
         (259 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    27   0.31 
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    27   0.41 
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    24   2.9  
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S...    24   3.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    24   3.8  
SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    23   5.1  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    23   5.1  
SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|c...    23   6.7  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    23   6.7  
SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S...    23   8.9  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    23   8.9  
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    23   8.9  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    23   8.9  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    23   8.9  

>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 27.5 bits (58), Expect = 0.31
 Identities = 16/53 (30%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
 Frame = -3

Query: 161 QSFGQHTINNFFPSVVAVFFLRWLQYSSFFGDCS--LLSSSFFRKLNSLLSSN 9
           ++F +  ++++ P+++   F ++L  SSF       LLSSSF ++LN++ + N
Sbjct: 834 ETFNEELLSHYPPNIIYATFQKYL--SSFINRKFGVLLSSSFIQQLNTVENLN 884


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 27.1 bits (57), Expect = 0.41
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -3

Query: 140  INNFF-PSVVAVFFLRWLQYSSFFGDCSLLSSSFFRKLNSLLSSNP 6
            +NNFF  SVV  F L W Q  + F    L   ++    N + SS P
Sbjct: 1070 VNNFFYKSVVWTFTLFWYQIYNNFDANYLFDYTYVMLFNLIFSSLP 1115


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 170 QFLVKSTGASKKERSLTSKKKQACREE 250
           Q L   T  ++++ +LT K+K   REE
Sbjct: 450 QLLANITSINERKENLTDKRKSLWREE 476


>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 68  RRRMKNTATTEERRLQPPK 124
           R+  KN A   +R LQPPK
Sbjct: 94  RKIQKNRAANLQRTLQPPK 112


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 102  KEDCNHRRKKIIYGVLAK*LYCCS 173
            KE CN+ +KKI Y +LA   +CC+
Sbjct: 2408 KELCNYLKKKICY-ILA---WCCT 2427


>SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 98  EERRLQPPKEKNYLWCVGQMIVLL 169
           +ER L   K   ++W  GQ+IVL+
Sbjct: 12  KERVLPVVKNTQFVWFSGQVIVLI 35


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 170 AAVQSFGQHTINNFFPSVVAVFFLRWLQYSSFF 72
           A VQS  QHT +    ++ ++     ++YS FF
Sbjct: 466 ATVQSISQHTHSELEDAIDSLGSFASVKYSGFF 498


>SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 341

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 85  ILHSSAIAVFFLPASSASLIVFFL 14
           ILH   +  F LP+++A LIV  +
Sbjct: 245 ILHLYGVERFSLPSTTAGLIVLII 268


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 96   PKKEDCNHRRKKIIYGVLAK*LY 164
            PK+ D N    +I+ GV+A  LY
Sbjct: 1253 PKEHDINSGNAEILCGVIAASLY 1275


>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
           S28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 288

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 50  KKEDCNRRRMKNTATTEERRLQ 115
           KK+  N+RR +N    EE R Q
Sbjct: 41  KKQKANQRRKQNLKRREELRKQ 62


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +3

Query: 42  EAGRKKTAIAEE*RILQPPKKEDCNHRRK 128
           + G     + ++ ++ Q P+K++ N+RRK
Sbjct: 225 QIGAIAAGLRQKGKLFQRPEKDEPNYRRK 253


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 53  KEDCNRRRMKNTATTEERRLQPPKEK 130
           ++    RR+++    EER+L P + K
Sbjct: 358 RKQVEERRLRHERENEERKLTPEERK 383


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 190 GSVEERKIAYLEKKTSMSRRK 252
           G VEER+IA+L+ +    +RK
Sbjct: 458 GFVEEREIAFLQHQIINLKRK 478


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 118 WLQSSFFGGCSILHSSAIAVF 56
           WL SS FG  SI  SS   V+
Sbjct: 78  WLPSSIFGRLSIFCSSLRQVY 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.126    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,025,471
Number of Sequences: 5004
Number of extensions: 18078
Number of successful extensions: 81
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)