Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_G08
         (259 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0660 - 26005210-26006150,26006440-26006467,26007307-260078...    31   0.17 
05_01_0579 - 5196888-5196970,5197063-5197621,5197704-5197786,519...    29   0.68 
11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008     27   2.7  
11_08_0032 - 27807489-27807497,27807641-27807684,27808046-278081...    27   2.7  
04_04_1268 - 32262994-32263017,32263411-32263488,32263653-322638...    26   3.6  
02_04_0480 - 23274945-23275196,23275558-23275623,23276709-232768...    25   6.3  
04_04_1192 + 31611804-31612113,31612235-31614058,31614098-316148...    25   8.4  
03_02_0314 + 7398247-7400877                                           25   8.4  
01_01_1006 - 7972645-7973811                                           25   8.4  

>11_06_0660 -
           26005210-26006150,26006440-26006467,26007307-26007838,
           26008863-26009008
          Length = 548

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 5   EGWKKEDY*ACGRSWKKEDCNRRRMKNTATTEERRLQPPKEKNYLW 142
           E WK++    C    K+E+C+++  KNT   +E   +  K     W
Sbjct: 417 EEWKEKKTEECVEEEKREECDQQERKNTEEDKEESEEDGKTTKQRW 462


>05_01_0579 -
           5196888-5196970,5197063-5197621,5197704-5197786,
           5199165-5199279,5199376-5199473,5200136-5200183,
           5200313-5200415,5201003-5201119,5201254-5201430,
           5202563-5202593,5203492-5203604,5203824-5204036
          Length = 579

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -1

Query: 157 HLANTP*IIFFLRWLQSSFFGGCSILHSSAIAVFFLPASSA 35
           H++  P ++        S    C I H S + VFF P S A
Sbjct: 315 HISTAPLLMLDANLSPDSLEAACKIAHESGVPVFFEPVSLA 355


>11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008
          Length = 1058

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 5   EGWKKEDY*ACGRSWKKEDCNRRRMKNTA 91
           +GW+ ED  +C   W    C+RRR + TA
Sbjct: 54  DGWR-EDNASCFCQWIGVSCSRRRQRVTA 81


>11_08_0032 -
           27807489-27807497,27807641-27807684,27808046-27808168,
           27810770-27810983,27811382-27811530,27811719-27812618,
           27812964-27814659
          Length = 1044

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 5   EGWKKEDY*ACGRSWKKEDCNRRRMKNTA 91
           +GW+ ED  +C   W    C+RRR + TA
Sbjct: 58  DGWR-EDNASCFCQWIGVSCSRRRQRVTA 85


>04_04_1268 -
           32262994-32263017,32263411-32263488,32263653-32263800,
           32263890-32264127,32264210-32264420,32264499-32264680,
           32264765-32264866,32265009-32266317,32266906-32266988,
           32267436-32267559
          Length = 832

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 228 FFEVSDLSFFDAPVDFTRNCSST 160
           FF V D SF +   + +RNCS T
Sbjct: 434 FFYVQDRSFEECAAECSRNCSCT 456


>02_04_0480 -
           23274945-23275196,23275558-23275623,23276709-23276851,
           23276947-23277063,23277219-23278683,23279561-23280730
          Length = 1070

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +2

Query: 50  KKEDCNRRRMKNTATTEERRLQP 118
           +K+  N+R + NT   +ER+++P
Sbjct: 266 EKDGTNKRTLSNTLVAKERKMRP 288


>04_04_1192 + 31611804-31612113,31612235-31614058,31614098-31614842,
            31615047-31616835,31617136-31617163,31617343-31617794
          Length = 1715

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 101  LRWLQYSSFFGDCSLLSSSFFRKLNSL 21
            L WL+   F    S+L+ SFF+ LNSL
Sbjct: 1424 LEWLETDDF----SVLTMSFFKHLNSL 1446


>03_02_0314 + 7398247-7400877
          Length = 876

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 76  SSAIAVFFLPASSASLIVFF 17
           S+ +AV   P+SS SL+VFF
Sbjct: 101 SNLLAVLRAPSSSRSLVVFF 120


>01_01_1006 - 7972645-7973811
          Length = 388

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -3

Query: 125 PSVVAVFFLRWLQYSSFFGDCSLLSSSFFRKLN 27
           P  VA FFL    +      CS+L   FF  LN
Sbjct: 333 PGEVAYFFLHSRVFGVDLRACSVLECEFFAMLN 365


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.126    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,552,744
Number of Sequences: 37544
Number of extensions: 111558
Number of successful extensions: 379
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 14,793,348
effective HSP length: 64
effective length of database: 12,390,532
effective search space used: 260201172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)