Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_G08
         (259 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK023303-1|BAB14516.1|  249|Homo sapiens protein ( Homo sapiens ...    28   6.2  
X76091-1|CAA53705.1|  723|Homo sapiens DNA binding protein RFX2 ...    27   8.2  
BC071571-1|AAH71571.1|  723|Homo sapiens RFX2 protein protein.         27   8.2  
BC028579-1|AAH28579.1|  723|Homo sapiens regulatory factor X, 2 ...    27   8.2  
AK125389-1|BAC86153.1|  147|Homo sapiens protein ( Homo sapiens ...    27   8.2  

>AK023303-1|BAB14516.1|  249|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13241 fis, clone OVARC1000557. ).
          Length = 249

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 67  SPKNEEYCNHRRKKTATTEGKKLFMVCWPNDCTAAVS 177
           SP++   C H RK    +   +  +V   + CTAA S
Sbjct: 99  SPRSSSCCEHHRKAAPESRRSRQGLVVRSSGCTAATS 135


>X76091-1|CAA53705.1|  723|Homo sapiens DNA binding protein RFX2
           protein.
          Length = 723

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -3

Query: 176 ETAAVQSFGQHTINNFFPSVVAVFFLRWLQYSSF-FGDCSLLSSSFF 39
           ++   Q   QH  +  FP     F L+W  YSS    D +L S++ F
Sbjct: 589 DSVVTQVLKQHAGSPSFPKAARQFLLKWSFYSSMVIRDLTLRSAASF 635


>BC071571-1|AAH71571.1|  723|Homo sapiens RFX2 protein protein.
          Length = 723

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -3

Query: 176 ETAAVQSFGQHTINNFFPSVVAVFFLRWLQYSSF-FGDCSLLSSSFF 39
           ++   Q   QH  +  FP     F L+W  YSS    D +L S++ F
Sbjct: 589 DSVVTQVLKQHAGSPSFPKAARQFLLKWSFYSSMVIRDLTLRSAASF 635


>BC028579-1|AAH28579.1|  723|Homo sapiens regulatory factor X, 2
           (influences HLA class II expression) protein.
          Length = 723

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -3

Query: 176 ETAAVQSFGQHTINNFFPSVVAVFFLRWLQYSSF-FGDCSLLSSSFF 39
           ++   Q   QH  +  FP     F L+W  YSS    D +L S++ F
Sbjct: 589 DSVVTQVLKQHAGSPSFPKAAQQFLLKWSFYSSMVIRDLTLRSAASF 635


>AK125389-1|BAC86153.1|  147|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43399 fis, clone OCBBF2009926. ).
          Length = 147

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 103 FFGGCSILHSSAIAVFFLPASSASLIV 23
           F GGC +LH  A   FFL   S  L+V
Sbjct: 15  FSGGCLLLHWQAGTEFFLHDKSGGLLV 41


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.315    0.126    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,233,295
Number of Sequences: 237096
Number of extensions: 653782
Number of successful extensions: 1755
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1754
length of database: 76,859,062
effective HSP length: 63
effective length of database: 61,922,014
effective search space used: 1362284308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)