Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_G06
         (335 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe...    25   3.1  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    24   5.4  
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz...    24   7.1  

>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -1

Query: 185 GRTHHTNLIRTPNWCSVAYLRKYKVSVSYIVRI 87
           G TH  N  +TP W S A      V   +++ +
Sbjct: 209 GATHTINYKKTPQWASPALKMTNGVGYHHVIEV 241


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +1

Query: 82  NDILTIYDTDTLYLRRYATEHQ 147
           +D+ T+Y  +T+ LRR A++++
Sbjct: 161 SDVFTLYTDETVLLRRCASDNK 182


>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 526

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 86  ISSQYTIQTPCTYVDMQRNTSLAF*SNLYDGF 181
           ++SQY I      VDM  +T +   SN +D F
Sbjct: 484 LNSQYLISANLPAVDMHSSTPVNEQSNPFDSF 515


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,517,013
Number of Sequences: 5004
Number of extensions: 31952
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)