Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_G06
         (335 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   0.43 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   3.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   3.0  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   4.0  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   5.3  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   5.3  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   5.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   5.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                20   9.2  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 0.43
 Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -1

Query: 131 YLRKYK-VSVSYIVRISLKITCIYEALDVYIYDLE 30
           YL  YK  ++ Y+V+++LK++C    L +Y +D +
Sbjct: 142 YLWLYKDKTILYMVKLTLKLSCAMNFL-IYPHDTQ 175


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 176 HHTNLIRTPNWCSVAYLRKY-KVSVSYIVRISLKITC 69
           H  N+I  PN     Y+R +   SV Y +RISL ++C
Sbjct: 129 HFHNIIM-PN----VYIRIFPNGSVLYSIRISLTLSC 160


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 176 HHTNLIRTPNWCSVAYLRKY-KVSVSYIVRISLKITC 69
           H  N+I  PN     Y+R +   SV Y +RISL ++C
Sbjct: 129 HFHNIIM-PN----VYIRIFPNGSVLYSIRISLTLSC 160


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 144 PVWRSNQICMMGSTECVHY*DISLSKMGR 230
           P+ R +   ++GS +C++   I+L   GR
Sbjct: 170 PMDRQSCPLILGSCKCIYVQSINLCMAGR 198


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = -3

Query: 237 GHPSPFWRDLCPSSGRIRS--NPSY 169
           G P+PF R + P++ R+R   NP +
Sbjct: 157 GPPTPFPRFIPPNAYRLRPPLNPRF 181


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = -3

Query: 237 GHPSPFWRDLCPSSGRIRS--NPSY 169
           G P+PF R + P++ R+R   NP +
Sbjct: 157 GPPTPFPRFIPPNAYRLRPPLNPRF 181


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = -3

Query: 237 GHPSPFWRDLCPSSGRIRS--NPSY 169
           G P+PF R + P++ R+R   NP +
Sbjct: 385 GPPTPFPRFIPPNAYRLRPPLNPRF 409


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 124 RRYATEHQFGVLIKFV*WVRPNASTTRT*VSP 219
           RR+ + HQ+G+L+      RP      T V P
Sbjct: 504 RRFFSFHQWGILVYEPSACRPRHEIRSTDVIP 535


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 262 PSEYHMHKWTS 230
           PS+YH H+ +S
Sbjct: 323 PSQYHPHRGSS 333


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,482
Number of Sequences: 438
Number of extensions: 2431
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)