Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_G05
         (312 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    27   0.86 
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   3.5  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    25   3.5  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    24   6.1  
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    24   6.1  
SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar...    24   6.1  
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    23   8.1  

>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 26.6 bits (56), Expect = 0.86
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 38  YTRIVYLGIFSVTCFALSAAGRDINSKFAQNNESQ 142
           Y R++ +GIFS   F  S + + INSK A+   +Q
Sbjct: 253 YKRLLSMGIFSEPDFHPSLSRQWINSKIAETKLTQ 287


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 149 MDLEIHYFEQISNLCHGQQHSM 84
           ++L IH  E   + CHGQ +++
Sbjct: 405 LELRIHLAEVFFHCCHGQSYNL 426


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 191 LHPTHTIRRYMSSVMDLEIHYFEQI 117
           +HPTH +   M S++ L+  Y +QI
Sbjct: 652 MHPTHLLLVVMFSMLVLQWWYMQQI 676


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = -2

Query: 266 ALGTFTNTHVPAASVIQ*LCHELT*LHPTHTIRRYMSSVMDLEIHYFEQISN 111
           +L  F   H+P    +  +  E T L  +   +  M  ++ LE+H  EQ +N
Sbjct: 714 SLKQFERDHIPLKDELVTITGETTDLQESMHHKSRMLELVVLELHTLEQQAN 765


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 197 T*LHPTHTIRR-YMSSVMDLEIHYFEQISNLCH 102
           T L P H++   Y  +V+D+  HYF+ ++ LC+
Sbjct: 271 TFLDPKHSMFSFYDKAVLDVR-HYFKDVTVLCN 302


>SPAC343.14c |||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 238 YLPPA*YSDFVMNLRNYTPHTLY 170
           Y+PP     F+ NL  Y P  LY
Sbjct: 357 YIPPDLVDLFITNLGGYPPSYLY 379


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -2

Query: 287 FFANYTSALGTF 252
           FF NYTSA G F
Sbjct: 238 FFPNYTSAAGVF 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,209,045
Number of Sequences: 5004
Number of extensions: 20903
Number of successful extensions: 56
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)