Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_G05
(312 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0495 - 24319531-24320831,24320923-24321109,24322919-243230... 29 1.0
02_04_0292 + 21642544-21642726 27 2.3
01_06_1807 - 40021733-40021987 27 3.1
11_01_0747 + 6296323-6296505 27 4.1
10_01_0323 + 3530246-3530446,3531091-3531726,3531860-3532018,353... 27 4.1
08_01_0866 - 8449458-8449712 26 7.2
01_06_1531 + 38024757-38024790,38025592-38025803,38026111-380262... 26 7.2
01_01_1105 + 8748105-8748344 26 7.2
01_01_1073 + 8456426-8456677,8457039-8457152,8457546-8457710 26 7.2
12_02_0598 - 20894072-20894398 25 9.5
11_01_0756 - 6352810-6353064 25 9.5
10_08_0201 + 15746790-15746889,15748726-15748863,15750715-157507... 25 9.5
07_02_0027 - 11963040-11963294 25 9.5
07_01_0829 - 6703293-6703547 25 9.5
07_01_0727 - 5547718-5547972 25 9.5
07_01_0726 - 5543633-5543887 25 9.5
06_03_0476 - 21228474-21228728 25 9.5
05_04_0217 - 19140070-19140306 25 9.5
04_04_0272 - 24073753-24074802 25 9.5
02_05_1083 + 33982277-33982531 25 9.5
01_01_1074 + 8460072-8460326 25 9.5
>11_06_0495 -
24319531-24320831,24320923-24321109,24322919-24323062,
24324467-24324469
Length = 544
Score = 28.7 bits (61), Expect = 1.0
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = -2
Query: 191 LHPTHTIRRYMSSVMDLEIHYFEQISNL 108
+ PT T+RR M++V L +H+F+Q S +
Sbjct: 331 VRPTPTVRRIMTNV--LSLHFFQQASGI 356
>02_04_0292 + 21642544-21642726
Length = 60
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 185 PTHTIRRYMSSVMDLEIHYFEQ 120
P T+RRY S++ DL H FE+
Sbjct: 18 PPDTVRRYESAISDLAGHGFEE 39
>01_06_1807 - 40021733-40021987
Length = 84
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 176 TIRRYMSSVMDLEIHYFEQISNLCHGQQHSMQSTL 72
T+RRY S++ DL H FE+ L + +Q+ +
Sbjct: 45 TVRRYESAISDLAGHGFEEEGYLVINYKSDLQTVM 79
>11_01_0747 + 6296323-6296505
Length = 60
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 176 TIRRYMSSVMDLEIHYFEQISNLCHGQQHSMQSTL 72
TIRRY S V DL H FE+ + G + +Q+ +
Sbjct: 21 TIRRYESVVSDLAGHGFEEGAYPVVGYESDLQTAM 55
>10_01_0323 +
3530246-3530446,3531091-3531726,3531860-3532018,
3532276-3532569,3557747-3557941,3558875-3559095,
3559190-3559373,3559797-3559973,3561319-3561824,
3561880-3562060
Length = 917
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = +2
Query: 20 KLKVLLYTRIVYLGIFSVTCFALSAAGRDINSKFAQNNESQG 145
++ V + T I+YL + + + A G D+ + F+ N+++G
Sbjct: 556 RMSVFITTLIIYLCVKLMEIDSYVAYGNDVVNSFSTGNQTEG 597
>08_01_0866 - 8449458-8449712
Length = 84
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 176 TIRRYMSSVMDLEIHYFEQ 120
T+RRY S++ DL H FE+
Sbjct: 45 TVRRYESAISDLAEHGFEE 63
>01_06_1531 +
38024757-38024790,38025592-38025803,38026111-38026248,
38026405-38026449,38026499-38026591,38028072-38028815
Length = 421
Score = 25.8 bits (54), Expect = 7.2
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 79 LCIECCWP 102
LC ECCWP
Sbjct: 147 LCFECCWP 154
>01_01_1105 + 8748105-8748344
Length = 79
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 176 TIRRYMSSVMDLEIHYFEQ 120
T+RRY S++ DL H FE+
Sbjct: 40 TVRRYESAISDLAEHGFEE 58
>01_01_1073 + 8456426-8456677,8457039-8457152,8457546-8457710
Length = 176
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 176 TIRRYMSSVMDLEIHYFEQ 120
T+RRY S++ DL H FE+
Sbjct: 47 TVRRYESAISDLAGHRFEE 65
>12_02_0598 - 20894072-20894398
Length = 108
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 176 TIRRYMSSVMDLEIHYFEQ 120
T+RRY S++ DL H FE+
Sbjct: 69 TVRRYESAISDLAGHGFEE 87
>11_01_0756 - 6352810-6353064
Length = 84
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 176 TIRRYMSSVMDLEIHYFEQ 120
T+RRY S++ DL H FE+
Sbjct: 45 TVRRYESAISDLAGHGFEE 63
>10_08_0201 +
15746790-15746889,15748726-15748863,15750715-15750792,
15751251-15752632
Length = 565
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 111 IRNLLKIMNLKVHYGTHVPAY 173
+RNL+ + N+ H G HV +Y
Sbjct: 424 LRNLMLLENMNKHLGGHVTSY 444
>07_02_0027 - 11963040-11963294
Length = 84
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 176 TIRRYMSSVMDLEIHYFEQ 120
T+RRY S++ DL H FE+
Sbjct: 45 TVRRYESTISDLAGHGFEE 63
>07_01_0829 - 6703293-6703547
Length = 84
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 176 TIRRYMSSVMDLEIHYFEQ 120
T+RRY S++ DL H FE+
Sbjct: 45 TVRRYESAISDLAGHGFEE 63
>07_01_0727 - 5547718-5547972
Length = 84
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 176 TIRRYMSSVMDLEIHYFEQ 120
T+RRY S++ DL H FE+
Sbjct: 45 TVRRYESAISDLTGHGFEE 63
>07_01_0726 - 5543633-5543887
Length = 84
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 176 TIRRYMSSVMDLEIHYFEQ 120
T+RRY S++ DL H FE+
Sbjct: 45 TVRRYESAISDLAGHGFEE 63
>06_03_0476 - 21228474-21228728
Length = 84
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 176 TIRRYMSSVMDLEIHYFEQ 120
T+RRY S++ DL H FE+
Sbjct: 45 TVRRYESAISDLAGHGFEE 63
>05_04_0217 - 19140070-19140306
Length = 78
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 176 TIRRYMSSVMDLEIHYFEQ 120
T+RRY S++ DL H FE+
Sbjct: 39 TVRRYESAISDLAGHGFEE 57
>04_04_0272 - 24073753-24074802
Length = 349
Score = 25.4 bits (53), Expect = 9.5
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Frame = +2
Query: 2 HEELINKLKVL-LYTRIVYLGIFSVTCFALSAA----GRDINSKF 121
H+E +N+ +L LY+ VYL + V FA +AA G D+ +F
Sbjct: 140 HKERMNEYVLLMLYSLHVYLALELVLAFAAAAARAVMGMDLEPQF 184
>02_05_1083 + 33982277-33982531
Length = 84
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 176 TIRRYMSSVMDLEIHYFEQ 120
T+RRY S++ DL H FE+
Sbjct: 45 TVRRYESAISDLAGHGFEE 63
>01_01_1074 + 8460072-8460326
Length = 84
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 176 TIRRYMSSVMDLEIHYFEQ 120
T+RRY S++ DL H FE+
Sbjct: 45 TVRRYESAISDLAGHGFEE 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,296,452
Number of Sequences: 37544
Number of extensions: 119190
Number of successful extensions: 240
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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