Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_G05
         (312 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025456-1|AAB70959.3|  438|Caenorhabditis elegans Hypothetical ...    27   2.1  
U29488-11|AAK93842.1|  753|Caenorhabditis elegans Hypothetical p...    27   3.6  
U64598-12|AAX88835.1|  408|Caenorhabditis elegans Choline kinase...    26   4.8  
U64598-11|AAK39220.1|  429|Caenorhabditis elegans Choline kinase...    26   4.8  
U23519-12|AAK31505.3| 1021|Caenorhabditis elegans Hypothetical p...    25   8.4  

>AF025456-1|AAB70959.3|  438|Caenorhabditis elegans Hypothetical
           protein C46F9.4 protein.
          Length = 438

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 137 IHYFEQISNLCHGQQHSMQSTLRRIFPDKLCVYK 36
           +H F  IS L +G+++      R   P +LC++K
Sbjct: 9   VHTFNDISKLGNGKRYYSDIEKRHNIPWRLCIFK 42


>U29488-11|AAK93842.1|  753|Caenorhabditis elegans Hypothetical
           protein C56C10.11 protein.
          Length = 753

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = -2

Query: 281 ANYTSALGTFTNTH-VPAASVIQ*LCHELT*LHPTHTIRRYMSSVMDLEIHYF-EQISNL 108
           A Y+     F+ +H   A  V+      L+ LH   +I   M ++  L   Y+ E++S L
Sbjct: 178 APYSPTHPPFSTSHEAQAMLVLDRFVDFLSALHFNSSIPPGMQNIQSLVWQYYCEKLSIL 237

Query: 107 CHGQQH 90
            HG QH
Sbjct: 238 THGTQH 243


>U64598-12|AAX88835.1|  408|Caenorhabditis elegans Choline kinase a
           protein 2, isoformb protein.
          Length = 408

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -2

Query: 209 CHELT*LHPTHTIRRYMSSVMDLEIHYFEQISNLCHGQQ 93
           CHE++  H +  I + ++ V  LE+  +++   LC   Q
Sbjct: 140 CHEISLAHMSTKIAKRVAKVHQLEVPIWKEPDYLCEALQ 178


>U64598-11|AAK39220.1|  429|Caenorhabditis elegans Choline kinase a
           protein 2, isoforma protein.
          Length = 429

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -2

Query: 209 CHELT*LHPTHTIRRYMSSVMDLEIHYFEQISNLCHGQQ 93
           CHE++  H +  I + ++ V  LE+  +++   LC   Q
Sbjct: 161 CHEISLAHMSTKIAKRVAKVHQLEVPIWKEPDYLCEALQ 199


>U23519-12|AAK31505.3| 1021|Caenorhabditis elegans Hypothetical
           protein F26G1.1 protein.
          Length = 1021

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 300 YQSVFFCKLYIGFRNLYKYSCTCRQRD 220
           Y+ V   ++YI   N+ +Y CTCR+ D
Sbjct: 890 YKGVPLAEIYI---NMLRYLCTCRKVD 913


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,606,948
Number of Sequences: 27780
Number of extensions: 115448
Number of successful extensions: 240
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)