Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_G05
         (312 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    25   0.21 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    25   0.21 
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    25   0.21 
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   2.6  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    20   8.0  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.0 bits (52), Expect = 0.21
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 182 THTIRRYMSSVMDLEIHYFEQISNLCHGQQHSMQSTLRRI 63
           T +IR  +++   + + YF     LCH +  S   T+R I
Sbjct: 127 TRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDI 166


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.0 bits (52), Expect = 0.21
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 182 THTIRRYMSSVMDLEIHYFEQISNLCHGQQHSMQSTLRRI 63
           T +IR  +++   + + YF     LCH +  S   T+R I
Sbjct: 127 TRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDI 166


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 25.0 bits (52), Expect = 0.21
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 182 THTIRRYMSSVMDLEIHYFEQISNLCHGQQHSMQSTLRRI 63
           T +IR  +++   + + YF     LCH +  S   T+R I
Sbjct: 66  TRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDI 105


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 121 KFRIYVTASSTQCKARYGEYSQ 56
           KFR +V+  S   + RY  Y+Q
Sbjct: 452 KFRRWVSTMSRPFEVRYDPYTQ 473


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 9/36 (25%), Positives = 13/36 (36%)
 Frame = -3

Query: 148 WTLRFIILSKFRIYVTASSTQCKARYGEYSQINYAC 41
           W +  I    F IY   +  +     G YS  +  C
Sbjct: 166 WLIALISAIPFAIYTKVNLVEYPPESGNYSADSAMC 201


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,006
Number of Sequences: 438
Number of extensions: 1419
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6595479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)