Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_G04
         (258 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    27   0.54 
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   2.2  
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    24   2.9  
SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr...    24   2.9  
SPBC16E9.15 |||heat shock factor binding protein |Schizosaccharo...    23   5.1  
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    23   5.1  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    23   5.1  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    23   5.1  
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    23   6.7  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    23   6.7  
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    23   6.7  
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S...    23   6.7  
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    23   8.9  
SPBC3B9.06c |apg3||autophagy associated protein Apg3 |Schizosacc...    23   8.9  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    23   8.9  

>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 0.54
 Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +3

Query: 174 GDFSVIDTEFSS-IRERFDAEMRKMEEE 254
           G F+ +D+E    IRE  +AE++KMEE+
Sbjct: 468 GVFTRVDSELGRRIREATEAEVKKMEEK 495


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -3

Query: 238 LISASNRSLMLENSVSMTEKSPSLMGIFLLRPPSAIFNL 122
           LIS+S+  ++++NS S  + +P +  +  L P   + N+
Sbjct: 224 LISSSSEVIIVQNSASSFQPAPFMTAVATLYPGVELENV 262


>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 189 IDTEFSSIRERFDAEMRK 242
           ++ E + +RER D EMRK
Sbjct: 349 LEQELNFLRERIDVEMRK 366


>SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 112

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +3

Query: 123 KLKMADGGLKRNIPIKLGDFSVIDTEFSSIRERFDAEMRKMEEEM 257
           K ++ D G  + +   LG    + ++ +S+R   DAEM  + E++
Sbjct: 40  KKELEDVGEDKAVYTSLGKM-FMKSDLASVRTHLDAEMASLREDI 83


>SPBC16E9.15 |||heat shock factor binding protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 75

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 174 GDFSVIDTEFSSIRERFDAEMRKMEEEM 257
           GDF  +  +FS   E     + ++EE M
Sbjct: 31  GDFETLQKQFSEKLETMSTRLDQLEESM 58


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -2

Query: 239 PHLSVESFPDARKFSVDD*EVTKFNGDISLKTTVSHFQF 123
           PH+S  S  + + F + +  + K NG  +L+     F F
Sbjct: 126 PHMSWSSKSEGKMFKIPEELLNKLNGFGALEKQKKSFSF 164


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 181 KSPSLMGIFLLRPPSAIFNLCV 116
           K P  + +FL+R  S I NLC+
Sbjct: 285 KGPKQVALFLVRLSSLIPNLCL 306


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 232 SASNRSLMLENSVSMTEKSPSLMGIFLLRPP 140
           +AS+ SLML++ V+ +    +  G    RPP
Sbjct: 679 TASSSSLMLDSPVTPSSPYSTSQGYSFYRPP 709


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 996

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 182  EVTKFNGDISLKTTVSHFQFVCRVEIVKLNKHW 84
            E+ K + +  ++ + S F  V  V  +K+NKH+
Sbjct: 912  EIRKIDDNSYVRVSTSTFDKVPVVLTIKMNKHY 944


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 253 SSSIFLISASNRSLMLENSVSMTEKSPSLMGIFLLRPPS 137
           SSS   ISAS R+ + + + S ++ S ++  +    PPS
Sbjct: 526 SSSELPISASKRAALSQQTESASKSSSNISEMCDSHPPS 564


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = -3

Query: 148 RPPSAIFNLCVAWKSLN*TNTGILYLSK 65
           +PP    N+C  W      N G  Y SK
Sbjct: 96  KPPRKFCNVCGYWGKYACQNCGTSYCSK 123


>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 109 STRHTN*KWLTVVLREISPLNLVTSQSSTLNFRASGNDS 225
           ST   + KW+    +EISP ++V    + + F A+G+D+
Sbjct: 89  STGRVSSKWIVDKNKEISPYSVVQWIENDMVF-ATGDDN 126


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +3

Query: 144 GLKRNIPIKLGDFSVIDTEFSSIRERFDAEMRKMEEEM 257
           G++  +   L + +++    S  +  FDAE  K+E E+
Sbjct: 507 GIESRLTSVLSECNMLRETASEEKNAFDAESDKLEREL 544


>SPBC3B9.06c |apg3||autophagy associated protein Apg3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 275

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 111 HATHKLKMADGGLKRNIPIKLGDFSVIDTEFSS 209
           HA+  LK+     +RN PI++  + V+  +F S
Sbjct: 229 HASVLLKLIKQHRERNDPIRVDQYMVLFLKFVS 261


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 256 ISSSIFLISASNRSLMLENSVSMTEKSPSLMGIFL 152
           ISS+      SN+   LE+ VS +   PSL  + L
Sbjct: 59  ISSNYTFPHGSNKQASLESPVSYSNPIPSLTWLSL 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,116,955
Number of Sequences: 5004
Number of extensions: 20400
Number of successful extensions: 53
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)