Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_G04
(258 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0040 - 15801686-15801993,15802030-15802662,15802989-15803109 29 0.68
04_04_1272 - 32288142-32288456,32288538-32288670,32288780-322890... 27 2.1
08_02_0482 - 17643603-17643955,17644024-17646604 26 3.6
07_01_0886 - 7356591-7356662,7357002-7357079,7357373-7357444,735... 26 4.8
02_02_0457 + 10503801-10507358 26 4.8
01_01_0978 + 7738232-7740848,7740929-7741320 26 4.8
12_02_0770 - 23007202-23007333,23007475-23007555,23007642-230077... 25 6.3
04_04_0859 + 28805836-28805842,28806405-28806492,28807474-288075... 25 6.3
01_06_1801 - 39954425-39954533,39955289-39955578,39955786-399568... 25 6.3
12_02_0795 + 23217463-23217684,23218296-23219155,23220001-232209... 25 8.4
04_04_1218 - 31822915-31823141,31823418-31823832,31824090-318244... 25 8.4
03_05_0761 - 27515441-27515650,27515967-27516074,27516666-275168... 25 8.4
>06_03_0040 - 15801686-15801993,15802030-15802662,15802989-15803109
Length = 353
Score = 28.7 bits (61), Expect = 0.68
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +3
Query: 123 KLKMADGGLKRNIPIKLGDFSVIDTEFSSIRERFDAEMRK 242
K+K+ DGGLKRN+ I LG F R R E+ K
Sbjct: 245 KIKLEDGGLKRNL-ISLGTLHEEGLIFHGNRNRKTIEIMK 283
>04_04_1272 -
32288142-32288456,32288538-32288670,32288780-32289020,
32289124-32289340,32289557-32289681,32290873-32292157
Length = 771
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 114 ATHKLKMADGGLKRNIPIKLGDFSVID 194
A +K A GG +RN+P++ G+ + D
Sbjct: 331 AAWAMKDASGGCRRNVPLRCGNTTTTD 357
>08_02_0482 - 17643603-17643955,17644024-17646604
Length = 977
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 123 KLKMADGGLKRNIPIKLGDFSVIDT 197
+L +AD L NIP +LGD V+++
Sbjct: 509 QLDLADNRLTGNIPAELGDLPVLNS 533
>07_01_0886 -
7356591-7356662,7357002-7357079,7357373-7357444,
7357511-7357600,7357669-7357783,7358509-7358639,
7358717-7358992,7360147-7360283,7360368-7360502,
7360958-7361325,7362111-7362229,7362295-7362339
Length = 545
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 135 ADGGLKRNIPIKLGDFSVIDTEFSSIRERFDAEMRKMEEE 254
A + ++P+ L D S +E S++R DA K EE+
Sbjct: 52 ASSSRRSSVPLPLPDPSSSRSETSAVRSEGDAAEEKSEEQ 91
>02_02_0457 + 10503801-10507358
Length = 1185
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 78 NIPVFV*FNDFHATHKLKMADGGLKRNIPIKLGDFSVIDTEFSSIR 215
+IP+ V + F A KL++AD G+ + + E+SSIR
Sbjct: 964 SIPLHVWSSSFPALQKLQIADSGITGESQSSVLTSLSVPGEYSSIR 1009
>01_01_0978 + 7738232-7740848,7740929-7741320
Length = 1002
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 102 NDFHATHKLKMADGGLKRNIPIKLGDFSVID 194
N + +L +AD G IP +LGD V++
Sbjct: 524 NSWKKLSELNLADNGFTGAIPAELGDLPVLN 554
>12_02_0770 -
23007202-23007333,23007475-23007555,23007642-23007742,
23007855-23008455,23008742-23009365,23010294-23010377
Length = 540
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 117 THKLKMADGGLKRNIPIK 170
T KLK+ GG++R++P K
Sbjct: 189 TRKLKLKIGGIRRSVPAK 206
>04_04_0859 +
28805836-28805842,28806405-28806492,28807474-28807558,
28807638-28807763,28807819-28807968,28808497-28808541,
28808612-28808875,28809843-28809887,28810395-28810430,
28812048-28812816,28813063-28813925,28814024-28814182,
28814440-28814558,28815356-28815417,28816677-28816805,
28817395-28817460,28817757-28817890,28818025-28818162,
28818630-28818889,28818996-28819107,28819590-28819675,
28820655-28820735,28822841-28822928,28823222-28823260,
28823847-28823964,28824063-28824130,28824884-28824981,
28825238-28825397,28825691-28825816,28825876-28825945,
28826046-28826449
Length = 1664
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -3
Query: 91 NTGILYLSKHVSECRY 44
+TG+L+LSKH+ + RY
Sbjct: 840 HTGLLFLSKHLRKYRY 855
>01_06_1801 -
39954425-39954533,39955289-39955578,39955786-39956838,
39956998-39957263,39957345-39957420,39957525-39957605,
39957676-39957831,39958565-39958669,39958761-39959367,
39959514-39959585,39959802-39959953,39960063-39960240,
39960642-39960745,39960822-39960953,39961036-39961132,
39961280-39961407,39961533-39961592,39962799-39962918,
39963011-39963091,39963173-39963361,39963826-39964024,
39964177-39964257,39964398-39964588,39965226-39965382,
39965986-39966119,39966266-39966334,39966434-39966481,
39966572-39966646,39967112-39967192,39967399-39967461,
39967564-39967623,39967754-39967795,39968777-39968902,
39969027-39969176
Length = 1843
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -3
Query: 250 SSIFLISASNRSLMLENSVSMTEKSPSLMGIFLLRPPSAIFNLCVA 113
SS++ I M N V M + SPS F + PP F + A
Sbjct: 433 SSVYDIIFQTHYKMPRNPVYMMDTSPSSSQSFSVDPPKEFFQMLSA 478
>12_02_0795 +
23217463-23217684,23218296-23219155,23220001-23220929,
23221184-23221968
Length = 931
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 220 RSLMLENSVSMTEKSPSLMGIFLL 149
R L +EN + + P L+GIFL+
Sbjct: 664 RVLDIENGANRDQNQPGLLGIFLV 687
>04_04_1218 - 31822915-31823141,31823418-31823832,31824090-31824440,
31825391-31825549,31825965-31826093,31826257-31826460,
31827200-31827412,31827547-31830912,31830999-31831150,
31831912-31832407,31832646-31833456,31833537-31834728,
31834856-31834922
Length = 2593
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 111 HATHKLKMADGGLKRNIPIKL 173
H HKL GG+ R+I +KL
Sbjct: 2339 HGIHKLCRTIGGISRSIEVKL 2359
>03_05_0761 -
27515441-27515650,27515967-27516074,27516666-27516839,
27517185-27517469,27517688-27517920,27519422-27520139
Length = 575
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -2
Query: 227 VESFPDARKFSVDD*EVTKFNGDISLKTTVS 135
V SFP +S++D + NGD+ +++ V+
Sbjct: 310 VASFPYRVGYSLEDAAILSVNGDVDIQSIVA 340
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,000,370
Number of Sequences: 37544
Number of extensions: 123372
Number of successful extensions: 242
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 14,793,348
effective HSP length: 64
effective length of database: 12,390,532
effective search space used: 260201172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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