Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_G04
(258 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29612-7|AAO61437.1| 205|Caenorhabditis elegans Heat shock prot... 45 6e-06
U29612-6|AAA68804.1| 219|Caenorhabditis elegans Heat shock prot... 45 6e-06
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr... 29 0.60
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr... 29 0.60
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot... 29 0.60
Z81526-1|CAB04264.1| 816|Caenorhabditis elegans Hypothetical pr... 26 4.2
AF039052-10|AAF98634.1| 536|Caenorhabditis elegans Hypothetical... 26 4.2
AL161712-9|CAC70134.1| 343|Caenorhabditis elegans Hypothetical ... 25 5.6
AF106579-8|AAC78201.1| 710|Caenorhabditis elegans Hypothetical ... 25 5.6
Z83238-7|CAB05797.1| 313|Caenorhabditis elegans Hypothetical pr... 25 7.4
>U29612-7|AAO61437.1| 205|Caenorhabditis elegans Heat shock protein
protein 25,isoform b protein.
Length = 205
Score = 45.2 bits (102), Expect = 6e-06
Identities = 18/36 (50%), Positives = 28/36 (77%)
Frame = +3
Query: 150 KRNIPIKLGDFSVIDTEFSSIRERFDAEMRKMEEEM 257
+R I + ++SVID EF ++R+RF+ EMR++EEEM
Sbjct: 3 ERRIDVNRSNYSVIDNEFGNMRDRFEQEMRRVEEEM 38
>U29612-6|AAA68804.1| 219|Caenorhabditis elegans Heat shock protein
protein 25,isoform a protein.
Length = 219
Score = 45.2 bits (102), Expect = 6e-06
Identities = 18/36 (50%), Positives = 28/36 (77%)
Frame = +3
Query: 150 KRNIPIKLGDFSVIDTEFSSIRERFDAEMRKMEEEM 257
+R I + ++SVID EF ++R+RF+ EMR++EEEM
Sbjct: 17 ERRIDVNRSNYSVIDNEFGNMRDRFEQEMRRVEEEM 52
>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical protein
T06E4.3b protein.
Length = 2514
Score = 28.7 bits (61), Expect = 0.60
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +1
Query: 121 TN*KWLTVVLREISPLNLVTSQSSTLNFRASGNDSTLR*GKWK 249
TN + + LR+I PLNL ++QSS ++F N S LR W+
Sbjct: 1071 TNWYIILMTLRQI-PLNLDSTQSSWISFIEQINYSILRSNIWR 1112
>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical protein
T06E4.3a protein.
Length = 2531
Score = 28.7 bits (61), Expect = 0.60
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +1
Query: 121 TN*KWLTVVLREISPLNLVTSQSSTLNFRASGNDSTLR*GKWK 249
TN + + LR+I PLNL ++QSS ++F N S LR W+
Sbjct: 1071 TNWYIILMTLRQI-PLNLDSTQSSWISFIEQINYSILRSNIWR 1112
>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
protein.
Length = 2514
Score = 28.7 bits (61), Expect = 0.60
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +1
Query: 121 TN*KWLTVVLREISPLNLVTSQSSTLNFRASGNDSTLR*GKWK 249
TN + + LR+I PLNL ++QSS ++F N S LR W+
Sbjct: 1071 TNWYIILMTLRQI-PLNLDSTQSSWISFIEQINYSILRSNIWR 1112
>Z81526-1|CAB04264.1| 816|Caenorhabditis elegans Hypothetical
protein F33H2.2 protein.
Length = 816
Score = 25.8 bits (54), Expect = 4.2
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 97 SLTISTRHTN*KWLTVVLREISPL-NLVTSQSSTLN 201
+LTI T T+ +T + ISP+ +L+TS S LN
Sbjct: 304 NLTIHTSWTSNSTVTTPMSPISPMSSLITSTSDELN 339
>AF039052-10|AAF98634.1| 536|Caenorhabditis elegans Hypothetical
protein T22D1.1 protein.
Length = 536
Score = 25.8 bits (54), Expect = 4.2
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +3
Query: 102 NDFHATHKLKMADGGLKRNIPIKLGDFSVIDTEFSSIRERFDAEMRKM 245
N KL+M G+K IP K+ +S I +F AE +M
Sbjct: 132 NTIENLKKLEMESNGVKVEIPFKMACYSAPKPVIICISPQFVAEQWQM 179
>AL161712-9|CAC70134.1| 343|Caenorhabditis elegans Hypothetical
protein Y66D12A.12 protein.
Length = 343
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Frame = +1
Query: 7 GNDQSCLVC--H*VHSDTLKR 63
G+DQ CLVC H+DT++R
Sbjct: 42 GDDQQCLVCDTKIPHNDTIRR 62
>AF106579-8|AAC78201.1| 710|Caenorhabditis elegans Hypothetical
protein F54E2.5 protein.
Length = 710
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = -3
Query: 256 ISSSIFLISASNRSLMLENSVSMTEKSPSLMGIF 155
++ S+F+IS+SN + + ++S+ K + G+F
Sbjct: 69 LTISVFIISSSNLVINVPATLSLVSKEAAQSGLF 102
>Z83238-7|CAB05797.1| 313|Caenorhabditis elegans Hypothetical
protein T08G3.8 protein.
Length = 313
Score = 25.0 bits (52), Expect = 7.4
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = -3
Query: 238 LISASNRSLMLENSVSMTEKSPSLMGIFLLRPPSAIFNLCVAWKSLN*TNTGIL 77
LI S L +N T+ P L F++ + FN+C+ + TG++
Sbjct: 32 LIKLSYYFLYRKNKCYSTDLHPVLFRQFMIMQIACFFNVCIKFLIFRIPLTGVM 85
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,152,888
Number of Sequences: 27780
Number of extensions: 113686
Number of successful extensions: 196
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 12,740,198
effective HSP length: 64
effective length of database: 10,962,278
effective search space used: 230207838
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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