Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_G03
(414 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S... 146 2e-36
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa... 144 4e-36
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 26 2.0
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz... 25 4.7
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 25 4.7
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo... 25 6.1
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 25 6.1
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 25 6.1
SPBC18E5.05c |||RNA polymerase II elongator complex subunit|Schi... 24 8.1
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss... 24 8.1
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 24 8.1
>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 146 bits (353), Expect = 2e-36
Identities = 70/125 (56%), Positives = 94/125 (75%)
Frame = +2
Query: 14 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 193
ML+PK+NR +I++ LF++GV+VAKKD++ PKHP++ +PNLQVIKA QSL SRGY+K ++
Sbjct: 1 MLIPKENRKAIHQALFQQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59
Query: 194 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRS 373
W FY+ LTNEG+EYLR +LHLP E+VPAT KR VR R GRP+ R++ +
Sbjct: 60 NWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPAAPR---AGRPEPRERSSAADA 116
Query: 374 AYRRA 388
YRRA
Sbjct: 117 GYRRA 121
>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 144 bits (350), Expect = 4e-36
Identities = 71/125 (56%), Positives = 93/125 (74%)
Frame = +2
Query: 14 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 193
ML+PK+NR +I++ LF +GV+VAKKD++ PKHP++ +PNLQVIKA QSL SRGY+K ++
Sbjct: 1 MLIPKENRKAIHQALFSQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59
Query: 194 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRS 373
W FY+ LTNEG+EYLR +LHLP E+VPAT KR VR R GRP+ R + D +
Sbjct: 60 NWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPTAPR---AGRPEPRERASAD-A 115
Query: 374 AYRRA 388
YRRA
Sbjct: 116 GYRRA 120
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 2.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 335 RPDAPARTAEDRSAYRRAPPAGAPH 409
+P P + + Y++APPAGAP+
Sbjct: 113 QPPQPVQPNPYGAPYQQAPPAGAPY 137
>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 504
Score = 25.0 bits (52), Expect = 4.7
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 233 IEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGR 337
IEYL + PP + P L + E + G +GR
Sbjct: 199 IEYLPSQNYTPPSLEPNKLDEGMFLEGIGAGGIGR 233
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.0 bits (52), Expect = 4.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 327 QLAGLMLQHEQLKIDQLIGAHHQLELLMI 413
Q AGL+ HE L+ ++ AH + LL +
Sbjct: 758 QEAGLIAMHEDLEAKEICQAHFKTALLAL 786
>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 24.6 bits (51), Expect = 6.1
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = -3
Query: 133 VRDLLEIWMFGCMVVFLSYHDSLLE 59
+ + +IW FGC + + +H S E
Sbjct: 259 ITEKADIWSFGCTLYTIMFHASPFE 283
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 24.6 bits (51), Expect = 6.1
Identities = 15/48 (31%), Positives = 16/48 (33%)
Frame = +2
Query: 263 PPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAP 406
PP P + S T A APA A AY AP P
Sbjct: 58 PPSGPPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQPYPP 105
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 24.6 bits (51), Expect = 6.1
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 266 PEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRS 373
P I P ++ V TVR G+ PD P+ + R+
Sbjct: 791 PFIQPPSMTNQVAYPTVRDGSNNSPDHPSSSNSKRT 826
>SPBC18E5.05c |||RNA polymerase II elongator complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 24.2 bits (50), Expect = 8.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -3
Query: 214 PVKMPPCELFLNISS 170
P +PPCE+FL+ +S
Sbjct: 140 PSYLPPCEVFLDFTS 154
>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 24.2 bits (50), Expect = 8.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 226 IC*IPVKMPPCELFLNISSRFK*LHSFDHL 137
+C +P++ P C L L +S+ S+ HL
Sbjct: 318 VCTLPIECPSCSLVLILSTHL--ARSYHHL 345
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 24.2 bits (50), Expect = 8.1
Identities = 17/45 (37%), Positives = 19/45 (42%)
Frame = +2
Query: 263 PPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPA 397
P P+ S R T V P +PAR SAY APPA
Sbjct: 281 PYASTPSAAVGSSRGSTPASATV--PISPARGFPTTSAYNPAPPA 323
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,624,924
Number of Sequences: 5004
Number of extensions: 30882
Number of successful extensions: 102
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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