Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_G03
(414 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0970 + 21338072-21338074,21338192-21338240,21338688-213389... 146 6e-36
02_04_0177 + 20669053-20669055,20669150-20669198,20669680-206699... 146 6e-36
01_07_0270 - 42417782-42417850,42418207-42418342,42418826-424191... 140 5e-34
03_01_0474 + 3646724-3646789,3648952-3649067,3649547-3649595,364... 31 0.48
01_07_0054 - 40779336-40779599,40779734-40779848,40779998-407801... 31 0.48
05_03_0634 + 16432679-16433076,16433358-16433610,16433993-164342... 30 0.84
04_04_0674 + 27173948-27174188,27174704-27175260,27175310-271753... 28 3.4
02_01_0462 + 3332464-3332470,3333606-3335806 27 4.5
08_02_0824 + 21561699-21562415,21563294-21563362,21563424-215634... 27 5.9
07_03_1410 + 26363538-26363777,26365421-26365475,26365553-263656... 27 5.9
05_03_0373 - 13194723-13195847,13196219-13196809 27 5.9
05_04_0080 - 17742425-17742578,17742855-17743038,17743202-177432... 27 7.8
>04_03_0970 +
21338072-21338074,21338192-21338240,21338688-21338970,
21339570-21339705,21339761-21339769
Length = 159
Score = 146 bits (354), Expect = 6e-36
Identities = 75/141 (53%), Positives = 97/141 (68%), Gaps = 8/141 (5%)
Frame = +2
Query: 14 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 193
M++PK+NR I +YLF+EGV+ AKKDY+ KHP ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 194 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT--ETVRRGAVG-RPDAPARTAE 364
+W+++YWYLTN+GIE+LR +L+LP EIVPATLK+S R G G RP P R
Sbjct: 60 SWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEG 119
Query: 365 DRSAY-----RRAPPAGAPHD 412
DR + R P GAP D
Sbjct: 120 DRPRFGDRDGYRGGPRGAPGD 140
>02_04_0177 +
20669053-20669055,20669150-20669198,20669680-20669962,
20670526-20670661,20671014-20671094
Length = 183
Score = 146 bits (354), Expect = 6e-36
Identities = 75/141 (53%), Positives = 97/141 (68%), Gaps = 8/141 (5%)
Frame = +2
Query: 14 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 193
M++PK+NR I +YLF+EGV+ AKKDY+ KHP ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 194 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT--ETVRRGAVG-RPDAPARTAE 364
+W+++YWYLTN+GIE+LR +L+LP EIVPATLK+S R G G RP P R
Sbjct: 60 SWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEG 119
Query: 365 DRSAY-----RRAPPAGAPHD 412
DR + R P GAP D
Sbjct: 120 DRPRFGDRDGYRGGPRGAPGD 140
>01_07_0270 -
42417782-42417850,42418207-42418342,42418826-42419108,
42419459-42419507,42419614-42419616
Length = 179
Score = 140 bits (338), Expect = 5e-34
Identities = 71/141 (50%), Positives = 95/141 (67%), Gaps = 8/141 (5%)
Frame = +2
Query: 14 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 193
M++ K+NR I +YLF EGV+ AKKDY+ KHP ++ +PNL+VIK MQS KS+ YV+E F
Sbjct: 1 MIISKKNRREICKYLFHEGVLYAKKDYNLAKHPKVD-VPNLEVIKLMQSFKSKEYVRETF 59
Query: 194 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR--TETVRRGAVG-RPDAPARTAE 364
+W+H+YWYLTN+GIE+LR +L+LP E+VP TLK+S + + G G RP P R
Sbjct: 60 SWQHYYWYLTNDGIEHLRSYLNLPSEVVPNTLKKSAKPPSRPFGSGPPGDRPRGPPRFEG 119
Query: 365 DRSAY-----RRAPPAGAPHD 412
DR + R P GAP D
Sbjct: 120 DRPRFGDRDGYRGGPRGAPGD 140
>03_01_0474 +
3646724-3646789,3648952-3649067,3649547-3649595,
3649641-3649697,3649743-3650993
Length = 512
Score = 30.7 bits (66), Expect = 0.48
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -1
Query: 351 AGASGLPTAPRRTVSVRTDLFRVAGTISGGKCRKI 247
A A G P P + VR L+ T GG CR +
Sbjct: 3 AAAGGAPPRPAAGIRVRVPLYMTGQTYQGGSCRGV 37
>01_07_0054 -
40779336-40779599,40779734-40779848,40779998-40780181,
40780322-40780393,40780485-40780611,40780830-40781011,
40781099-40781249
Length = 364
Score = 30.7 bits (66), Expect = 0.48
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +2
Query: 44 IYEYLFKEGVMVA-KKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYL 220
+Y+ L ++G +VA KK + P H + ++ L I+ + GY +E Y Y+
Sbjct: 84 VYKGLLQDGTIVAIKKRHSPPSHEFIHEVNYLSSIRHRNLVNLLGYCQENGMQMLVYEYV 143
Query: 221 TNEGIE-YLRIFLHLP 265
N + +L H P
Sbjct: 144 PNGSVSTHLHGSSHAP 159
>05_03_0634 +
16432679-16433076,16433358-16433610,16433993-16434291,
16434553-16434729,16435001-16435621,16435690-16435784,
16436000-16436088,16436185-16436250,16436475-16437026,
16437879-16437953,16438305-16438375,16438456-16438513,
16441506-16442048
Length = 1098
Score = 29.9 bits (64), Expect = 0.84
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Frame = +2
Query: 143 IKAMQSLKSRGYVKEQFAWRH---FYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTET 313
I + L S G WR F+ YLT E I YL +HL + +T RS+ +
Sbjct: 605 ISSNAQLDSPGSANSSPFWRQVEPFFSYLTTEDIAYLSQQIHLSDD---STASRSIEGDE 661
Query: 314 VR--RGA---VGRPDAPARTAED 367
R +G+ + +P PA + +D
Sbjct: 662 SRKYKGSLEYISQPSTPAGSNKD 684
>04_04_0674 +
27173948-27174188,27174704-27175260,27175310-27175399,
27175475-27175714,27175801-27176022,27176124-27176433,
27176528-27176847,27176906-27177021,27177133-27177227,
27177331-27177407,27177520-27177615
Length = 787
Score = 27.9 bits (59), Expect = 3.4
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +2
Query: 260 LPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPA 397
LPP + LKR V RR + PD R +Y R PPA
Sbjct: 510 LPPPVRSRPLKRPVDIRD-RRPVMSIPDRVRRLPPPERSYDRRPPA 554
>02_01_0462 + 3332464-3332470,3333606-3335806
Length = 735
Score = 27.5 bits (58), Expect = 4.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 162 LNLEDMLRNSSHGGIFTGI*QMRVLNTLEFSCTYLL 269
L +M RN +GGI I + V+ +L+ SC LL
Sbjct: 575 LQFLNMSRNVLYGGIPNDIGHLHVVESLDLSCNRLL 610
>08_02_0824 +
21561699-21562415,21563294-21563362,21563424-21563459,
21564533-21564600,21565259-21565277,21565662-21565763,
21566173-21566288,21566501-21566595,21568093-21568264,
21568413-21568493,21569732-21569801,21570106-21570132
Length = 523
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +2
Query: 263 PPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPA 397
PPE L+ + RRG +P P A + + +PPA
Sbjct: 100 PPEAASEALRGAASPPERRRGGDRQPSHPTEAASEAPSGSASPPA 144
>07_03_1410 +
26363538-26363777,26365421-26365475,26365553-26365644,
26365732-26365787,26366026-26366101,26366790-26366856,
26367197-26367263,26368276-26368342,26368759-26368842,
26369749-26369904,26370641-26370718,26371323-26371391,
26371476-26371541,26371623-26371751,26372862-26372951,
26373306-26373371,26373768-26373836,26373903-26374007,
26374374-26374499,26374687-26374745,26374832-26374868,
26375370-26375519
Length = 667
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 32 NRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIP 130
++VS++ +L GV+ AK YH + KIP
Sbjct: 107 SKVSVHLFLHSTGVIAAKFQYHQKLVDAVHKIP 139
>05_03_0373 - 13194723-13195847,13196219-13196809
Length = 571
Score = 27.1 bits (57), Expect = 5.9
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 272 IVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGA 403
++ + + E +RR + GR +R A++ RRA PAGA
Sbjct: 43 LISGAVSAAEPNERIRRSS-GRYIVASRRADEEDGLRRAVPAGA 85
>05_04_0080 -
17742425-17742578,17742855-17743038,17743202-17743273,
17743343-17743469,17743915-17744135,17744234-17744387
Length = 303
Score = 26.6 bits (56), Expect = 7.8
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +2
Query: 44 IYEYLFKEGVMVA-KKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYL 220
+Y+ L +G +VA KK AP+ E++ L I + GY +E Y YL
Sbjct: 98 VYKGLLLDGSVVAIKKRIGAPRQEFAEEVRKLSEINHRNIVTLIGYCQEGGLQMLVYEYL 157
Query: 221 TNEGI 235
N +
Sbjct: 158 PNGSV 162
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,885,032
Number of Sequences: 37544
Number of extensions: 205912
Number of successful extensions: 738
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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