Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_G03
(414 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U14972-1|AAA85660.1| 165|Homo sapiens ribosomal protein S10 pro... 189 4e-48
BX255972-3|CAH73101.1| 172|Homo sapiens ribosomal protein S10 p... 189 4e-48
BX255972-2|CAH73100.1| 165|Homo sapiens ribosomal protein S10 p... 189 4e-48
BC073799-1|AAH73799.1| 165|Homo sapiens RPS10 protein protein. 189 4e-48
BC071946-1|AAH71946.1| 165|Homo sapiens ribosomal protein S10 p... 189 4e-48
BC070235-1|AAH70235.1| 165|Homo sapiens RPS10 protein protein. 189 4e-48
BC005012-1|AAH05012.1| 165|Homo sapiens RPS10 protein protein. 189 4e-48
BC001955-1|AAH01955.1| 165|Homo sapiens RPS10 protein protein. 189 4e-48
BC001032-1|AAH01032.1| 165|Homo sapiens ribosomal protein S10 p... 189 4e-48
AB209165-1|BAD92402.1| 174|Homo sapiens ribosomal protein S10 v... 187 1e-47
AB007151-1|BAA25817.1| 78|Homo sapiens ribosomal protein S10 p... 139 3e-33
AY480047-1|AAR95680.1| 4684|Homo sapiens plectin 6 protein. 130 1e-30
Z54367-1|CAA91196.1| 4684|Homo sapiens plectin protein. 126 4e-29
BC030568-1|AAH30568.1| 72|Homo sapiens LOC376693 protein protein. 95 1e-19
U07149-1|AAA16958.1| 346|Homo sapiens retinal degeneration slow... 31 1.5
M73531-1|AAA60260.1| 346|Homo sapiens retinal degeneration slow... 31 1.5
BC074720-1|AAH74720.1| 346|Homo sapiens peripherin 2 (retinal d... 31 1.5
AL049843-2|CAB75420.1| 346|Homo sapiens peripherin 2 (retinal d... 31 1.5
BC089447-1|AAH89447.1| 981|Homo sapiens proline-rich transmembr... 31 2.0
BC040508-1|AAH40508.1| 597|Homo sapiens PRRT3 protein protein. 31 2.0
AK126796-1|BAC86698.1| 195|Homo sapiens protein ( Homo sapiens ... 31 2.0
AK090993-1|BAC03564.1| 667|Homo sapiens protein ( Homo sapiens ... 31 2.0
X04714-1|CAA28420.1| 4560|Homo sapiens apo-B100 precursor protein. 29 6.1
X04506-1|CAA28191.1| 4563|Homo sapiens protein ( Human mRNA for ... 29 6.1
M19828-1|AAB00481.1| 4563|Homo sapiens protein ( Human apolipopr... 29 6.1
M17367-1|AAA51741.1| 728|Homo sapiens APOB protein. 29 6.1
M15421-1|AAA51758.1| 3262|Homo sapiens APOB protein. 29 6.1
J02610-1|AAA35549.1| 4563|Homo sapiens protein ( Human apolipopr... 29 6.1
AY324608-1|AAP72970.1| 4563|Homo sapiens apolipoprotein B (inclu... 29 6.1
AC010872-1|AAX88848.1| 3929|Homo sapiens unknown protein. 29 6.1
>U14972-1|AAA85660.1| 165|Homo sapiens ribosomal protein S10
protein.
Length = 165
Score = 189 bits (460), Expect = 4e-48
Identities = 97/137 (70%), Positives = 108/137 (78%), Gaps = 7/137 (5%)
Frame = +2
Query: 14 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 187
MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 188 QFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVR---RGAVG-RPDAPAR 355
QFAWRHFYWYLTNEGI+YLR +LHLPPEIVPATL+RS R ET R +G G RP R
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS-RPETGRPRPKGLEGERPARLTR 119
Query: 356 TAEDRSAYRR-APPAGA 403
DR YRR A P GA
Sbjct: 120 GEADRDTYRRSAVPPGA 136
>BX255972-3|CAH73101.1| 172|Homo sapiens ribosomal protein S10
protein.
Length = 172
Score = 189 bits (460), Expect = 4e-48
Identities = 97/137 (70%), Positives = 108/137 (78%), Gaps = 7/137 (5%)
Frame = +2
Query: 14 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 187
MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 188 QFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVR---RGAVG-RPDAPAR 355
QFAWRHFYWYLTNEGI+YLR +LHLPPEIVPATL+RS R ET R +G G RP R
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS-RPETGRPRPKGLEGERPARLTR 119
Query: 356 TAEDRSAYRR-APPAGA 403
DR YRR A P GA
Sbjct: 120 GEADRDTYRRSAVPPGA 136
>BX255972-2|CAH73100.1| 165|Homo sapiens ribosomal protein S10
protein.
Length = 165
Score = 189 bits (460), Expect = 4e-48
Identities = 97/137 (70%), Positives = 108/137 (78%), Gaps = 7/137 (5%)
Frame = +2
Query: 14 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 187
MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 188 QFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVR---RGAVG-RPDAPAR 355
QFAWRHFYWYLTNEGI+YLR +LHLPPEIVPATL+RS R ET R +G G RP R
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS-RPETGRPRPKGLEGERPARLTR 119
Query: 356 TAEDRSAYRR-APPAGA 403
DR YRR A P GA
Sbjct: 120 GEADRDTYRRSAVPPGA 136
>BC073799-1|AAH73799.1| 165|Homo sapiens RPS10 protein protein.
Length = 165
Score = 189 bits (460), Expect = 4e-48
Identities = 97/137 (70%), Positives = 108/137 (78%), Gaps = 7/137 (5%)
Frame = +2
Query: 14 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 187
MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 188 QFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVR---RGAVG-RPDAPAR 355
QFAWRHFYWYLTNEGI+YLR +LHLPPEIVPATL+RS R ET R +G G RP R
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS-RPETGRPRPKGLEGERPARLTR 119
Query: 356 TAEDRSAYRR-APPAGA 403
DR YRR A P GA
Sbjct: 120 GEADRDTYRRSAVPPGA 136
>BC071946-1|AAH71946.1| 165|Homo sapiens ribosomal protein S10
protein.
Length = 165
Score = 189 bits (460), Expect = 4e-48
Identities = 97/137 (70%), Positives = 108/137 (78%), Gaps = 7/137 (5%)
Frame = +2
Query: 14 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 187
MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 188 QFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVR---RGAVG-RPDAPAR 355
QFAWRHFYWYLTNEGI+YLR +LHLPPEIVPATL+RS R ET R +G G RP R
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS-RPETGRPRPKGLEGERPARLTR 119
Query: 356 TAEDRSAYRR-APPAGA 403
DR YRR A P GA
Sbjct: 120 GEADRDTYRRSAVPPGA 136
>BC070235-1|AAH70235.1| 165|Homo sapiens RPS10 protein protein.
Length = 165
Score = 189 bits (460), Expect = 4e-48
Identities = 97/137 (70%), Positives = 108/137 (78%), Gaps = 7/137 (5%)
Frame = +2
Query: 14 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 187
MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 188 QFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVR---RGAVG-RPDAPAR 355
QFAWRHFYWYLTNEGI+YLR +LHLPPEIVPATL+RS R ET R +G G RP R
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS-RPETGRPRPKGLEGERPARLTR 119
Query: 356 TAEDRSAYRR-APPAGA 403
DR YRR A P GA
Sbjct: 120 GEADRDTYRRSAVPPGA 136
>BC005012-1|AAH05012.1| 165|Homo sapiens RPS10 protein protein.
Length = 165
Score = 189 bits (460), Expect = 4e-48
Identities = 97/137 (70%), Positives = 108/137 (78%), Gaps = 7/137 (5%)
Frame = +2
Query: 14 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 187
MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 188 QFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVR---RGAVG-RPDAPAR 355
QFAWRHFYWYLTNEGI+YLR +LHLPPEIVPATL+RS R ET R +G G RP R
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS-RPETGRPRPKGLEGERPARLTR 119
Query: 356 TAEDRSAYRR-APPAGA 403
DR YRR A P GA
Sbjct: 120 GEADRDTYRRSAVPPGA 136
>BC001955-1|AAH01955.1| 165|Homo sapiens RPS10 protein protein.
Length = 165
Score = 189 bits (460), Expect = 4e-48
Identities = 97/137 (70%), Positives = 108/137 (78%), Gaps = 7/137 (5%)
Frame = +2
Query: 14 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 187
MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 188 QFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVR---RGAVG-RPDAPAR 355
QFAWRHFYWYLTNEGI+YLR +LHLPPEIVPATL+RS R ET R +G G RP R
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS-RPETGRPRPKGLEGERPARLTR 119
Query: 356 TAEDRSAYRR-APPAGA 403
DR YRR A P GA
Sbjct: 120 GEADRDTYRRSAVPPGA 136
>BC001032-1|AAH01032.1| 165|Homo sapiens ribosomal protein S10
protein.
Length = 165
Score = 189 bits (460), Expect = 4e-48
Identities = 97/137 (70%), Positives = 108/137 (78%), Gaps = 7/137 (5%)
Frame = +2
Query: 14 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 187
MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 188 QFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVR---RGAVG-RPDAPAR 355
QFAWRHFYWYLTNEGI+YLR +LHLPPEIVPATL+RS R ET R +G G RP R
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS-RPETGRPRPKGLEGERPARLTR 119
Query: 356 TAEDRSAYRR-APPAGA 403
DR YRR A P GA
Sbjct: 120 GEADRDTYRRSAVPPGA 136
>AB209165-1|BAD92402.1| 174|Homo sapiens ribosomal protein S10
variant protein.
Length = 174
Score = 187 bits (455), Expect = 1e-47
Identities = 96/138 (69%), Positives = 108/138 (78%), Gaps = 7/138 (5%)
Frame = +2
Query: 11 KMLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVK 184
+MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYVK
Sbjct: 9 QMLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVK 68
Query: 185 EQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVR---RGAVG-RPDAPA 352
EQFAWRHFYWYLTNEGI+YLR +LHLPPEIVPA L+RS R ET R +G G RP
Sbjct: 69 EQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPAILRRS-RPETGRPRPKGLEGERPARLT 127
Query: 353 RTAEDRSAYRR-APPAGA 403
R DR YRR A P GA
Sbjct: 128 RGEADRDTYRRSAVPPGA 145
>AB007151-1|BAA25817.1| 78|Homo sapiens ribosomal protein S10
protein.
Length = 78
Score = 139 bits (337), Expect = 3e-33
Identities = 62/78 (79%), Positives = 70/78 (89%), Gaps = 2/78 (2%)
Frame = +2
Query: 35 RVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKEQFAWRHF 208
R++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYVKEQFAWRHF
Sbjct: 1 RIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHF 60
Query: 209 YWYLTNEGIEYLRIFLHL 262
YWYLTNEGI+YLR +LHL
Sbjct: 61 YWYLTNEGIQYLRDYLHL 78
>AY480047-1|AAR95680.1| 4684|Homo sapiens plectin 6 protein.
Length = 4684
Score = 130 bits (315), Expect = 1e-30
Identities = 68/129 (52%), Positives = 84/129 (65%), Gaps = 1/129 (0%)
Frame = +2
Query: 8 AKMLMPKQNRVSIYEYLFKEGVMVAKKDYHAPK-HPDLEKIPNLQVIKAMQSLKSRGYVK 184
A MLMP+ +IYE LF+EGVMVAKKD HP + + NLQV++AM SL++RG V+
Sbjct: 3 AGMLMPRDQLRAIYEVLFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMASLRARGLVR 62
Query: 185 EQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAE 364
E FAW HFYWYLTNEGI +LR +LHLPPEIVPA+L+R R + A P A
Sbjct: 63 ETFAWCHFYWYLTNEGIAHLRQYLHLPPEIVPASLQRVRRPVAMVMPARRTPHVQAVQGP 122
Query: 365 DRSAYRRAP 391
S +R P
Sbjct: 123 LGSPPKRGP 131
>Z54367-1|CAA91196.1| 4684|Homo sapiens plectin protein.
Length = 4684
Score = 126 bits (303), Expect = 4e-29
Identities = 66/129 (51%), Positives = 83/129 (64%), Gaps = 1/129 (0%)
Frame = +2
Query: 8 AKMLMPKQNRVSIYEYLFKEGVMVAKKDYHAPK-HPDLEKIPNLQVIKAMQSLKSRGYVK 184
A MLMP+ +IYE LF+EGVMVAKKD HP + + NLQV++AM SL++RG V+
Sbjct: 3 AGMLMPRDQLRAIYEVLFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMASLRARGLVR 62
Query: 185 EQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAE 364
E FAW HF+WYLTNEGI +LR +LHLPPEIV A+L+R R + A P A
Sbjct: 63 ETFAWCHFFWYLTNEGIAHLRQYLHLPPEIVAASLQRVRRPVAMVMPARRTPHVQAVQGP 122
Query: 365 DRSAYRRAP 391
S +R P
Sbjct: 123 LGSPPKRGP 131
>BC030568-1|AAH30568.1| 72|Homo sapiens LOC376693 protein protein.
Length = 72
Score = 94.7 bits (225), Expect = 1e-19
Identities = 45/60 (75%), Positives = 52/60 (86%), Gaps = 2/60 (3%)
Frame = +2
Query: 14 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 187
MLMPK+N ++IYE LFKEGVMVAKKD H PKHP+L + PNL+V+KAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNWIAIYELLFKEGVMVAKKDVHMPKHPELADKNAPNLRVMKAMQSLKSRGYVKE 60
>U07149-1|AAA16958.1| 346|Homo sapiens retinal degeneration slow
protein protein.
Length = 346
Score = 31.1 bits (67), Expect = 1.5
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -3
Query: 154 HSFDHLEVRDLLEIWMFGCMVVFLSYHDSLLEEVLIDRNTVLFW 23
+S+DH + L +W+ GC LSY+ SL+ + + T+L W
Sbjct: 234 YSYDHQT--EELNLWVRGCRAALLSYYSSLMNSMGV--VTLLIW 273
>M73531-1|AAA60260.1| 346|Homo sapiens retinal degeneration slow
protein protein.
Length = 346
Score = 31.1 bits (67), Expect = 1.5
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -3
Query: 154 HSFDHLEVRDLLEIWMFGCMVVFLSYHDSLLEEVLIDRNTVLFW 23
+S+DH + L +W+ GC LSY+ SL+ + + T+L W
Sbjct: 234 YSYDHQT--EELNLWVRGCRAALLSYYSSLMNSMGV--VTLLIW 273
>BC074720-1|AAH74720.1| 346|Homo sapiens peripherin 2 (retinal
degeneration, slow) protein.
Length = 346
Score = 31.1 bits (67), Expect = 1.5
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -3
Query: 154 HSFDHLEVRDLLEIWMFGCMVVFLSYHDSLLEEVLIDRNTVLFW 23
+S+DH + L +W+ GC LSY+ SL+ + + T+L W
Sbjct: 234 YSYDHQT--EELNLWVRGCRAALLSYYSSLMNSMGV--VTLLIW 273
>AL049843-2|CAB75420.1| 346|Homo sapiens peripherin 2 (retinal
degeneration, slow) protein.
Length = 346
Score = 31.1 bits (67), Expect = 1.5
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -3
Query: 154 HSFDHLEVRDLLEIWMFGCMVVFLSYHDSLLEEVLIDRNTVLFW 23
+S+DH + L +W+ GC LSY+ SL+ + + T+L W
Sbjct: 234 YSYDHQT--EELNLWVRGCRAALLSYYSSLMNSMGV--VTLLIW 273
>BC089447-1|AAH89447.1| 981|Homo sapiens proline-rich transmembrane
protein 3 protein.
Length = 981
Score = 30.7 bits (66), Expect = 2.0
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 263 PPEIVPATLKRSVRTETVRRGAVGRPDAPARTAED-RSAYRRAPPAGA 403
PP P+T +R + T +R A+G+P P TA SA +PPA A
Sbjct: 407 PPVQAPSTSRRGLIRVTTQR-ALGQPPPPEPTASSMASAPASSPPANA 453
>BC040508-1|AAH40508.1| 597|Homo sapiens PRRT3 protein protein.
Length = 597
Score = 30.7 bits (66), Expect = 2.0
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 263 PPEIVPATLKRSVRTETVRRGAVGRPDAPARTAED-RSAYRRAPPAGA 403
PP P+T +R + T +R A+G+P P TA SA +PPA A
Sbjct: 23 PPVKAPSTSRRGLIRVTTQR-ALGQPPPPEPTASSMASAPASSPPANA 69
>AK126796-1|BAC86698.1| 195|Homo sapiens protein ( Homo sapiens
cDNA FLJ44846 fis, clone BRACE3051144. ).
Length = 195
Score = 30.7 bits (66), Expect = 2.0
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -1
Query: 105 LGAW*SFLATMTPSLKRYS 49
LG W FLAT+TPSLKR S
Sbjct: 177 LGRWTFFLATVTPSLKRSS 195
>AK090993-1|BAC03564.1| 667|Homo sapiens protein ( Homo sapiens
cDNA FLJ33674 fis, clone BRAWH2002047. ).
Length = 667
Score = 30.7 bits (66), Expect = 2.0
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 263 PPEIVPATLKRSVRTETVRRGAVGRPDAPARTAED-RSAYRRAPPAGA 403
PP P+T +R + T +R A+G+P P TA SA +PPA A
Sbjct: 407 PPVQAPSTSRRGLIRVTTQR-ALGQPPPPEPTASSMASAPASSPPANA 453
>X04714-1|CAA28420.1| 4560|Homo sapiens apo-B100 precursor protein.
Length = 4560
Score = 29.1 bits (62), Expect = 6.1
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = -2
Query: 326 HHDVLSLYALTSSGLLVQFQEVSAGKF*GIQYPHLLNT 213
++++ +YA++S+ L ++ + K G+++ H LNT
Sbjct: 1830 NNEIKHIYAISSAALSASYKADTVAKVQGVEFSHRLNT 1867
>X04506-1|CAA28191.1| 4563|Homo sapiens protein ( Human mRNA for
apolipoprotein B-100. ).
Length = 4563
Score = 29.1 bits (62), Expect = 6.1
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = -2
Query: 326 HHDVLSLYALTSSGLLVQFQEVSAGKF*GIQYPHLLNT 213
++++ +YA++S+ L ++ + K G+++ H LNT
Sbjct: 1833 NNEIKHIYAISSAALSASYKADTVAKVQGVEFSHRLNT 1870
>M19828-1|AAB00481.1| 4563|Homo sapiens protein ( Human apolipoprotein
B-100 (apoB) gene, exons 22 through 29. ).
Length = 4563
Score = 29.1 bits (62), Expect = 6.1
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = -2
Query: 326 HHDVLSLYALTSSGLLVQFQEVSAGKF*GIQYPHLLNT 213
++++ +YA++S+ L ++ + K G+++ H LNT
Sbjct: 1833 NNEIKHIYAISSAALSASYKADTVAKVQGVEFSHRLNT 1870
>M17367-1|AAA51741.1| 728|Homo sapiens APOB protein.
Length = 728
Score = 29.1 bits (62), Expect = 6.1
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = -2
Query: 326 HHDVLSLYALTSSGLLVQFQEVSAGKF*GIQYPHLLNT 213
++++ +YA++S+ L ++ + K G+++ H LNT
Sbjct: 163 NNEIKHIYAISSAALSASYKADTVAKVQGVEFSHRLNT 200
>M15421-1|AAA51758.1| 3262|Homo sapiens APOB protein.
Length = 3262
Score = 29.1 bits (62), Expect = 6.1
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = -2
Query: 326 HHDVLSLYALTSSGLLVQFQEVSAGKF*GIQYPHLLNT 213
++++ +YA++S+ L ++ + K G+++ H LNT
Sbjct: 552 NNEIKHIYAISSAALSASYKADTVAKVQGVEFSHRLNT 589
>J02610-1|AAA35549.1| 4563|Homo sapiens protein ( Human apolipoprotein
B-100 mRNA, complete cds. ).
Length = 4563
Score = 29.1 bits (62), Expect = 6.1
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = -2
Query: 326 HHDVLSLYALTSSGLLVQFQEVSAGKF*GIQYPHLLNT 213
++++ +YA++S+ L ++ + K G+++ H LNT
Sbjct: 1833 NNEIKHIYAISSAALSASYKADTVAKVQGVEFSHRLNT 1870
>AY324608-1|AAP72970.1| 4563|Homo sapiens apolipoprotein B (including
Ag(x) antigen) protein.
Length = 4563
Score = 29.1 bits (62), Expect = 6.1
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = -2
Query: 326 HHDVLSLYALTSSGLLVQFQEVSAGKF*GIQYPHLLNT 213
++++ +YA++S+ L ++ + K G+++ H LNT
Sbjct: 1833 NNEIKHIYAISSAALSASYKADTVAKVQGVEFSHRLNT 1870
>AC010872-1|AAX88848.1| 3929|Homo sapiens unknown protein.
Length = 3929
Score = 29.1 bits (62), Expect = 6.1
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = -2
Query: 326 HHDVLSLYALTSSGLLVQFQEVSAGKF*GIQYPHLLNT 213
++++ +YA++S+ L ++ + K G+++ H LNT
Sbjct: 1833 NNEIKHIYAISSAALSASYKADTVAKVQGVEFSHRLNT 1870
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,670,237
Number of Sequences: 237096
Number of extensions: 1132369
Number of successful extensions: 2803
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 2690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2789
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3087725076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -