Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_G03
         (414 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal pr...   137   3e-33
Z75525-3|CAA99762.3|  245|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z93389-2|CAB07671.2|  355|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z75552-2|CAA99944.1|  894|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z75552-1|CAA99941.1|  920|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z70271-3|CAA94234.1|  358|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical pr...    27   7.1  
AF016664-1|AAB66070.2|  324|Caenorhabditis elegans Serpentine re...    27   7.1  
Z68749-4|CAA92959.2|  179|Caenorhabditis elegans Hypothetical pr...    26   9.4  
U40933-9|ABD63229.1|  867|Caenorhabditis elegans Hypothetical pr...    26   9.4  
U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical pr...    26   9.4  
AF078792-2|AAC26946.1|  512|Caenorhabditis elegans Hypothetical ...    26   9.4  

>AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 10 protein.
          Length = 149

 Score =  137 bits (332), Expect = 3e-33
 Identities = 73/136 (53%), Positives = 87/136 (63%), Gaps = 5/136 (3%)
 Frame = +2

Query: 14  MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 193
           M +PK +   IYEYLF EGV VAKKD++A  HP++E + NL+VIK ++SL SR  VKEQF
Sbjct: 1   MFIPKSHTKLIYEYLFNEGVTVAKKDFNAKTHPNIEGVSNLEVIKTLKSLASRELVKEQF 60

Query: 194 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRS 373
           AWRH+YWYLT+ GI YLR +L LP EIVPAT+K   R   V       P A      DR 
Sbjct: 61  AWRHYYWYLTDAGILYLREYLALPAEIVPATIKTKPREIRVPH-EDRAPRAAQGEKGDRE 119

Query: 374 AYR-----RAPPAGAP 406
           AYR      A P GAP
Sbjct: 120 AYRTEKVTEAGPGGAP 135


>Z75525-3|CAA99762.3|  245|Caenorhabditis elegans Hypothetical
           protein C03D6.5 protein.
          Length = 245

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 18/72 (25%), Positives = 34/72 (47%)
 Frame = +2

Query: 104 KHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPA 283
           +HPD+ KIP   ++     L    Y  ++F   +  W++ NE  +   +  + P + +  
Sbjct: 78  EHPDISKIPVEDIVGVSVLLLRCKYNDQEFI--NMGWFVANEYTDE-ELKENPPAKPLIE 134

Query: 284 TLKRSVRTETVR 319
            L R + TE +R
Sbjct: 135 KLSRKIETEDLR 146


>Z93389-2|CAB07671.2|  355|Caenorhabditis elegans Hypothetical
           protein T13F3.3 protein.
          Length = 355

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -1

Query: 273 ISGGKCRKILRYSIPSFVKYQ*KCLHANCSLTYPLDLSDC 154
           +S G C    R S+ S +KYQ K     C + Y LD   C
Sbjct: 28  LSCGACASFFRRSVVSKIKYQCKDGKKRCQIRY-LDRHFC 66


>Z75552-2|CAA99944.1|  894|Caenorhabditis elegans Hypothetical
           protein W04D2.1b protein.
          Length = 894

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 330 LAGLMLQHEQLKIDQLIGAHHQLE 401
           LA L++ HE  +I++L+ AH Q +
Sbjct: 537 LADLVIVHEMREIEELVNAHDQFK 560


>Z75552-1|CAA99941.1|  920|Caenorhabditis elegans Hypothetical
           protein W04D2.1a protein.
          Length = 920

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 330 LAGLMLQHEQLKIDQLIGAHHQLE 401
           LA L++ HE  +I++L+ AH Q +
Sbjct: 563 LADLVIVHEMREIEELVNAHDQFK 586


>Z70271-3|CAA94234.1|  358|Caenorhabditis elegans Hypothetical
           protein W08D2.6 protein.
          Length = 358

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 323 GAVGRPDAPARTAEDRSAYRRAPP 394
           G+V R   PAR A D   Y+ APP
Sbjct: 76  GSVFRARRPARGAYDEGDYKEAPP 99


>Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical
           protein ZK512.3 protein.
          Length = 1418

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -1

Query: 186 SLTYPLDLSDCIALITWRLGIFSRSG 109
           S  YPL L+DC  LIT +L + S SG
Sbjct: 293 SQLYPLGLADCYTLIT-KLLVSSNSG 317


>AF016664-1|AAB66070.2|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein77 protein.
          Length = 324

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +2

Query: 128 PNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPP--EIVPATLKRS 298
           P +QV+  +  +    ++ E      F W+ T+  I  + +F+  PP  +I+   LK++
Sbjct: 257 PMIQVLILVFEIPQMNFISELI----FAWFATHSSINMVSLFIFFPPYRKIIAKGLKKT 311


>Z68749-4|CAA92959.2|  179|Caenorhabditis elegans Hypothetical
           protein F56H11.2 protein.
          Length = 179

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -3

Query: 124 LLEIWMFGCMVVFLSYHDSLLEEVLIDRNTVLFWHQHLGL 5
           L+ + +FG ++ F++Y+ S   +  +DR TV     H+ L
Sbjct: 65  LVGVMIFGAVINFVNYYKSKKRQKELDRMTVESLLAHMAL 104


>U40933-9|ABD63229.1|  867|Caenorhabditis elegans Hypothetical
           protein F20D12.1b protein.
          Length = 867

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +2

Query: 71  VMVAKKDYHAPKHPDL-EKIPNLQ 139
           + V+  DY+APK P+  +K PNL+
Sbjct: 285 ITVSDVDYNAPKDPEFRQKYPNLK 308


>U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical
           protein F20D12.1a protein.
          Length = 1030

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +2

Query: 71  VMVAKKDYHAPKHPDL-EKIPNLQ 139
           + V+  DY+APK P+  +K PNL+
Sbjct: 448 ITVSDVDYNAPKDPEFRQKYPNLK 471


>AF078792-2|AAC26946.1|  512|Caenorhabditis elegans Hypothetical
           protein Y40D12A.2 protein.
          Length = 512

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 98  APKHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNE 229
           AP    +  +PNL   + ++S    GY+      + FYWY+ +E
Sbjct: 16  APADQQITSLPNLT--EPLRSKHYAGYLSISDVKQLFYWYVESE 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,046,602
Number of Sequences: 27780
Number of extensions: 175939
Number of successful extensions: 554
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)