Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_G02
(181 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 25 1.0
SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5 |Schi... 25 1.3
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc... 25 1.3
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 23 4.0
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 23 4.0
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 23 4.0
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 23 4.0
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 23 5.3
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch... 23 5.3
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||... 23 7.1
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 22 9.3
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom... 22 9.3
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 25.4 bits (53), Expect = 1.0
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = -2
Query: 126 KKNLVHTKADDISTRDKENEPQERKN 49
+++++H + DDI + + E QE +N
Sbjct: 733 RQSIIHVERDDIEVEEDDAEAQELEN 758
>SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 173
Score = 25.0 bits (52), Expect = 1.3
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +1
Query: 88 RNVVRFCMYKIFFLNQTVIMLL 153
+ ++R MY F+L+ T++ML+
Sbjct: 111 QQLIRAAMYSSFYLSATILMLI 132
>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
Lag1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 25.0 bits (52), Expect = 1.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 52 FPFLWLIFFISRRNVVRFCMYKIFFLN 132
FP W+I F + R +V +++ F LN
Sbjct: 117 FPIFWVIVFTAFRVIVMDYVFRPFVLN 143
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 23.4 bits (48), Expect = 4.0
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -3
Query: 179 YNYIRTYLHSSIITV*FKKKILYIQKRTTFRREIKKMSH 63
YN I Y + I + K+L++ + EIK+ SH
Sbjct: 209 YNQIINYAETDEIRRLTESKLLHMYNKLLILSEIKEKSH 247
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 23.4 bits (48), Expect = 4.0
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 57 FLVAHFLYLSSKCRPLLY 110
F++ HFL L + CR +L+
Sbjct: 115 FMIEHFLSLFAFCRTILF 132
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 23.4 bits (48), Expect = 4.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 166 VPTYIVALSLSDLKKKSCTYKS 101
+P ++ LSD++ KSC YKS
Sbjct: 302 LPPFMRYRHLSDVEWKSCFYKS 323
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 23.4 bits (48), Expect = 4.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 78 KENEPQERKNSFSLLDPTTKP 16
K+N+PQ KN F ++ P P
Sbjct: 208 KKNKPQTMKNKFYMVIPFLAP 228
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 23.0 bits (47), Expect = 5.3
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -3
Query: 110 IQKRTTFRREIKKMSHKKGKTHS 42
+ RT +++ +K SH G +HS
Sbjct: 707 VYSRTERKKDTQKQSHDHGHSHS 729
>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 23.0 bits (47), Expect = 5.3
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = +3
Query: 18 VSSWGPIKRMSFSFLVAHFLYLSSKCRPLLYVQDF 122
++ GP+K ++ H L+ C P L ++D+
Sbjct: 282 ITGKGPMKEEFSQYIKKHPLHKVRFCMPWLSIEDY 316
>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
1|||Manual
Length = 459
Score = 22.6 bits (46), Expect = 7.1
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 12 TRVSSWGPIKRMSFSFLVAHFLYLSS 89
TR SW +R+ F + LYL S
Sbjct: 319 TRAESWKRFQRLLFPLCILLVLYLVS 344
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 22.2 bits (45), Expect = 9.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 126 KKNLVHTKADDISTRDKENEPQERKNS 46
K LVH K++ + + +N P+ R NS
Sbjct: 323 KDYLVHCKSNQETAKHIQNNPRIRINS 349
>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 22.2 bits (45), Expect = 9.3
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 57 FLVAHFLYLSSKCRPLLYVQDFFF 128
F++A LYL S L YV F F
Sbjct: 80 FVIAESLYLISGSDELAYVPVFIF 103
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 726,069
Number of Sequences: 5004
Number of extensions: 10758
Number of successful extensions: 37
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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