Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_G02
         (181 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0768 - 19396146-19396607,19397855-19398175,19398424-193995...    30   0.30 
01_01_0292 - 2387653-2387711,2388061-2388684,2388814-2389104,238...    27   2.1  

>04_03_0768 -
           19396146-19396607,19397855-19398175,19398424-19399569,
           19400073-19400855,19402114-19402149
          Length = 915

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = -3

Query: 128 KKKILYIQKRTTFRREIKKMSHKKGKTHS 42
           KK+ +  QKR  FRR+++K++ +KG  +S
Sbjct: 633 KKQEILAQKRDEFRRQLEKLAKQKGLANS 661


>01_01_0292 -
           2387653-2387711,2388061-2388684,2388814-2389104,
           2389338-2389390,2390496-2390968,2391090-2391432,
           2391793-2391911,2392081-2392512,2392657-2392747,
           2392833-2392942,2393681-2393875,2394581-2394622,
           2395144-2395268,2395856-2395926,2396047-2396147
          Length = 1042

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -3

Query: 128 KKKILYIQKRTTFRREIKKMSHKKGKTHSLYWTPRRNPRAE 6
           +KK +  + ++  ++ +  + HKK     + WTPR  P A+
Sbjct: 754 QKKPVLGKVKSKAKKWMHLLHHKKKPQEDMMWTPRAGPSAD 794


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,260,587
Number of Sequences: 37544
Number of extensions: 56708
Number of successful extensions: 169
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 14,793,348
effective HSP length: 39
effective length of database: 13,329,132
effective search space used: 266582640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)