Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_G02
         (181 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC130422-1|AAI30423.1| 2210|Homo sapiens mediator complex subuni...    28   4.7  
AY338463-1|AAR08418.1| 2210|Homo sapiens thyroid hormone recepto...    28   4.7  
AL133033-1|CAB61363.1| 1908|Homo sapiens hypothetical protein pr...    28   4.7  
AF515599-1|AAQ08182.1| 2210|Homo sapiens PROSIT240 protein.            28   4.7  
AB028948-1|BAA82977.2| 1917|Homo sapiens KIAA1025 protein protein.     28   4.7  

>BC130422-1|AAI30423.1| 2210|Homo sapiens mediator complex subunit
           13-like protein.
          Length = 2210

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 120 NLVHTKADDISTRDKENEPQERKNSFSLLDPTTKPSC 10
           N   +K   +ST   E EP     ++  +DPT + SC
Sbjct: 387 NRTQSKRSQMSTPTLEEEPASNPATWDFVDPTQRVSC 423


>AY338463-1|AAR08418.1| 2210|Homo sapiens thyroid hormone
           receptor-associated protein complex 240 kDa
           component-like protein.
          Length = 2210

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 120 NLVHTKADDISTRDKENEPQERKNSFSLLDPTTKPSC 10
           N   +K   +ST   E EP     ++  +DPT + SC
Sbjct: 387 NRTQSKRSQMSTPTLEEEPASNPATWDFVDPTQRVSC 423


>AL133033-1|CAB61363.1| 1908|Homo sapiens hypothetical protein
           protein.
          Length = 1908

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 120 NLVHTKADDISTRDKENEPQERKNSFSLLDPTTKPSC 10
           N   +K   +ST   E EP     ++  +DPT + SC
Sbjct: 85  NRTQSKRSQMSTPTLEEEPASNPATWDFVDPTQRVSC 121


>AF515599-1|AAQ08182.1| 2210|Homo sapiens PROSIT240 protein.
          Length = 2210

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 120 NLVHTKADDISTRDKENEPQERKNSFSLLDPTTKPSC 10
           N   +K   +ST   E EP     ++  +DPT + SC
Sbjct: 387 NRTQSKRSQMSTPTLEEEPASNPATWDFVDPTQRVSC 423


>AB028948-1|BAA82977.2| 1917|Homo sapiens KIAA1025 protein protein.
          Length = 1917

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 120 NLVHTKADDISTRDKENEPQERKNSFSLLDPTTKPSC 10
           N   +K   +ST   E EP     ++  +DPT + SC
Sbjct: 94  NRTQSKRSQMSTPTLEEEPASNPATWDFVDPTQRVSC 130


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,276,947
Number of Sequences: 237096
Number of extensions: 306583
Number of successful extensions: 828
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 76,859,062
effective HSP length: 39
effective length of database: 67,612,318
effective search space used: 1352246360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)