Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_G02
         (181 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025724-10|AAG23372.2| 1073|Caenorhabditis elegans Hypothetical...    29   0.44 
AF067211-6|AAC16989.1|  308|Caenorhabditis elegans Serpentine re...    27   1.3  
AF067211-5|AAW88420.1|  329|Caenorhabditis elegans Serpentine re...    27   1.3  
AL023828-21|CAA19466.1|  381|Caenorhabditis elegans Hypothetical...    26   4.1  
AL023828-20|CAA19465.1|  378|Caenorhabditis elegans Hypothetical...    26   4.1  
U50308-6|AAG24025.2|  936|Caenorhabditis elegans Dispatched fami...    25   5.4  
Z83105-1|CAB05480.1|  335|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z77132-1|CAB00859.1|  278|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z72503-7|CAA96597.1|  424|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z70205-2|CAA94116.1|  529|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr...    25   7.1  
U64845-6|AAC48028.1|  556|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z68748-5|CAA92956.2|  446|Caenorhabditis elegans Hypothetical pr...    25   9.4  

>AC025724-10|AAG23372.2| 1073|Caenorhabditis elegans Hypothetical
            protein Y67D8C.9 protein.
          Length = 1073

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +3

Query: 18   VSSWGPIKRMSFSFLVAHFLYLSSKCRPLLYVQDFFFKSDSDN 146
            +++WGP+  + F +L  + L++SS  + +L+    FF +D  N
Sbjct: 1033 LTNWGPLLSLHFEYLERYLLWVSSVSQGVLHQ---FFAADLSN 1072


>AF067211-6|AAC16989.1|  308|Caenorhabditis elegans Serpentine
           receptor, class z protein85, isoform a protein.
          Length = 308

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 52  FPFLWLIFFISRRNVVRFC--MYKIFFLNQTVIMLL 153
           FPF     F+SRRN+  F   +Y  FF+N+ + + L
Sbjct: 114 FPFHIFTRFLSRRNLPDFIWYLYAFFFVNELIGIFL 149


>AF067211-5|AAW88420.1|  329|Caenorhabditis elegans Serpentine
           receptor, class z protein85, isoform b protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 52  FPFLWLIFFISRRNVVRFC--MYKIFFLNQTVIMLL 153
           FPF     F+SRRN+  F   +Y  FF+N+ + + L
Sbjct: 135 FPFHIFTRFLSRRNLPDFIWYLYAFFFVNELIGIFL 170


>AL023828-21|CAA19466.1|  381|Caenorhabditis elegans Hypothetical
           protein Y17G7B.18b protein.
          Length = 381

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 108 TKADDISTRDKENE-PQERKNSFSLLDPTTKPS 13
           +K D ++   +  E P+E K    LLDPTT+ S
Sbjct: 25  SKTDPLNIEIELTENPEEEKKRLGLLDPTTERS 57


>AL023828-20|CAA19465.1|  378|Caenorhabditis elegans Hypothetical
           protein Y17G7B.18a protein.
          Length = 378

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 108 TKADDISTRDKENE-PQERKNSFSLLDPTTKPS 13
           +K D ++   +  E P+E K    LLDPTT+ S
Sbjct: 25  SKTDPLNIEIELTENPEEEKKRLGLLDPTTERS 57


>U50308-6|AAG24025.2|  936|Caenorhabditis elegans Dispatched family
           protein 2 protein.
          Length = 936

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 92  FRREIKKMSHKKGKTHSLY 36
           +RRE+++MSH + K  S+Y
Sbjct: 401 YRREVERMSHLEYKVGSIY 419


>Z83105-1|CAB05480.1|  335|Caenorhabditis elegans Hypothetical
           protein F14H3.1 protein.
          Length = 335

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
 Frame = +3

Query: 51  FSFLVAHFLYLSSKCRPLLY----VQDFFFK 131
           F FL++H +  SS C  LLY    V D+ +K
Sbjct: 134 FIFLISHGIVWSSVCELLLYGDQKVADYIYK 164


>Z77132-1|CAB00859.1|  278|Caenorhabditis elegans Hypothetical
           protein F54D1.1 protein.
          Length = 278

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -3

Query: 119 ILYIQKRTTFRREIKKMSHKKGKTHSLYWTP 27
           + Y +   T++   K+ S    ++HS YW P
Sbjct: 247 VSYAKMNGTYQERPKRKSQLDEQSHSNYWAP 277


>Z72503-7|CAA96597.1|  424|Caenorhabditis elegans Hypothetical
           protein C26C6.4a protein.
          Length = 424

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 27  WGPIKRMSFSFLVAHFLYLSSKCRPLLY 110
           W P K  SFS LV  F+++ +   P  +
Sbjct: 12  WWPKKSFSFSVLVVLFIFVVAAALPFTF 39


>Z70205-2|CAA94116.1|  529|Caenorhabditis elegans Hypothetical
           protein C11H1.3 protein.
          Length = 529

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 111 HTKADDISTRDKENEPQERKNSFSLLDPTTKPS 13
           H+   DIS  ++E+EP +R+ S    D  +K S
Sbjct: 443 HSSVSDISESEEESEPPQREVSKPSEDCESKKS 475


>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
           protein M110.4b protein.
          Length = 1155

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -2

Query: 87  TRDKENEPQERKNSFSLLDPTTKPSCRI 4
           T     EP+ ++ +  ++DPTTK +  +
Sbjct: 128 THTAPQEPKRQRKALEIVDPTTKKAIEV 155


>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
           protein M110.4a protein.
          Length = 1156

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -2

Query: 87  TRDKENEPQERKNSFSLLDPTTKPSCRI 4
           T     EP+ ++ +  ++DPTTK +  +
Sbjct: 128 THTAPQEPKRQRKALEIVDPTTKKAIEV 155


>U64845-6|AAC48028.1|  556|Caenorhabditis elegans Hypothetical
           protein F45F2.5 protein.
          Length = 556

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 58  FLWLIFFISRRNVVRFCMYKIF 123
           FL+L  F+   NV+  C+Y +F
Sbjct: 84  FLYLYLFVLYPNVINSCIYYLF 105


>Z68748-5|CAA92956.2|  446|Caenorhabditis elegans Hypothetical
           protein F13H10.5 protein.
          Length = 446

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 80  IKKMSHKKGKTHSLY 36
           IK++  KKGKTH +Y
Sbjct: 265 IKQLQVKKGKTHQVY 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,973,613
Number of Sequences: 27780
Number of extensions: 58730
Number of successful extensions: 250
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 12,740,198
effective HSP length: 40
effective length of database: 11,628,998
effective search space used: 220950962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)