Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_G01
(264 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 27 0.56
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 25 2.3
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 24 4.0
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ... 23 5.3
SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces p... 23 5.3
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 23 5.3
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac... 23 7.0
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 23 7.0
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 23 7.0
SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy... 23 7.0
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1... 23 7.0
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces... 23 9.2
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 23 9.2
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 26.6 bits (56), Expect = 0.56
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 129 FYTTKYLKKFQKCFLQRKA*TSSYKFTRI 215
F +YLKK +K F + K + +Y FT+I
Sbjct: 251 FGVVEYLKKAEKRFEEEKERSKNYLFTKI 279
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 24.6 bits (51), Expect = 2.3
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 66 HLDDT*NHLRIYSIQNIF*IKFYTTKYLKKFQKCFLQ 176
HL + R Y + N I++Y+T +++ Q C +Q
Sbjct: 478 HLPTARSVSRTYRLSNGKSIQYYSTLFVRLIQSCSIQ 514
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 23.8 bits (49), Expect = 4.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 12 FGTRAKHNKESVDQLISL 65
FG A +N+E VD+L+ L
Sbjct: 181 FGVMAPNNEEDVDELLQL 198
>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 655
Score = 23.4 bits (48), Expect = 5.3
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 92 KNLFNTKYFLNKILHNEIFEEVSKMFSTKKSLDKFLQIY 208
+N+F T L ++NEI EVS + S K ++ +I+
Sbjct: 181 ENVFMTAETLLMYMYNEIRPEVSMLMSHKLAVHVLGKIF 219
>SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 23.4 bits (48), Expect = 5.3
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +2
Query: 26 KT*QRISRSTYLVAFRRYLKPFKNLFNTKYFLNKILHNEIFEEVSKMFSTKKSLDKFLQI 205
K+ I + L RYLK K++ N Y++ K + ++ + K LD+ +
Sbjct: 175 KSHSNIPKDIELACVIRYLKHLKSVPNVSYYIYKFPFKILADK--SLEDNLKYLDELDEN 232
Query: 206 YK 211
YK
Sbjct: 233 YK 234
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 23.4 bits (48), Expect = 5.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 41 ISRSTYLVAFRRYLKPFKNLFNTKYF 118
+S S L+ +Y KPF + KYF
Sbjct: 273 VSLSDLLLIILKYDKPFVTQYKEKYF 298
>SPBC8D2.19 |mde3||serine/threonine protein kinase
Mde3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 559
Score = 23.0 bits (47), Expect = 7.0
Identities = 12/58 (20%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 35 QRISRSTYLV-AFRRYLKPFKNLFNTKYFLNKILHNEIFEEVSKMFSTKKSLDKFLQI 205
++IS+ L+ ++ P++N+F F++ L ++F+ + + + LQI
Sbjct: 77 RKISKHPCLIDLLETFMDPYRNIFLVMEFMDCNLFQLFKRRQGRLFTKETAFNILLQI 134
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 23.0 bits (47), Expect = 7.0
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -1
Query: 162 FETSSNISLCKILFKKYFVLNKFLNG 85
F ++S+I L + + KYF NK++ G
Sbjct: 839 FASNSSIVLLGLHYLKYFGSNKYILG 864
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 23.0 bits (47), Expect = 7.0
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 50 STYLVAFRRYLKPFKNLFNTKYFLNKILHNEIFEEVSKMFS 172
S +L FRR K K +Y +NK + F V +FS
Sbjct: 2336 SPFLEIFRRMRKTLKKQTIEEYSINKKYLMQWFASVIHVFS 2376
>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 336
Score = 23.0 bits (47), Expect = 7.0
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 128 ILHNEIFEEVSKMFSTKKSLDKFLQIYKN*IRRQISKTTSVTNSD 262
I NEI +S S+ + + L K +RR SK + V NS+
Sbjct: 226 IEQNEILHVISDTLSSPRRRNPLLSSPKTPLRRSFSK-SKVRNSN 269
>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 486
Score = 23.0 bits (47), Expect = 7.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 186 KLFFVENIFETSSNISLCKILFKK 115
KLF +EN++++S S+ L KK
Sbjct: 160 KLFQIENVYDSSLASSVINALGKK 183
>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 22.6 bits (46), Expect = 9.2
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -1
Query: 168 NIFETSSNISLCKILFKKYFVLNKFLNGFKYRLN 67
N+FE + LCK + LN+ + G K +N
Sbjct: 429 NLFEDYNEFGLCKSFICLFKRLNEDIIGPKLNIN 462
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 22.6 bits (46), Expect = 9.2
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = +2
Query: 44 SRSTYLVAFRRYLKPFKNLFNTKYFLNKILHNEIFEEVSKMFSTKKSLDK 193
S STYL RR F + YFL K +F K+ L+K
Sbjct: 441 SLSTYLTDSRRKANRFLSYDEEHYFLQK---KNLFLNADGTLVAKEKLEK 487
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 939,614
Number of Sequences: 5004
Number of extensions: 14889
Number of successful extensions: 56
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 53488084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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