Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_G01
         (264 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0486 + 3854889-3855014,3855897-3856089,3856206-3856310,385...    28   1.2  
11_01_0518 + 4057428-4057538,4059609-4059801,4059921-4060025,406...    27   1.6  
03_01_0204 + 1611837-1611840,1611926-1612048,1614570-1614659,161...    26   4.8  
10_08_0603 - 19120434-19120538,19121209-19121310,19121430-191214...    25   8.3  
05_01_0194 + 1406405-1406513,1406810-1407027,1407128-1407317,140...    25   8.3  
01_06_1282 + 35972234-35972244,35972451-35972522,35972714-359727...    25   8.3  

>12_01_0486 +
           3854889-3855014,3855897-3856089,3856206-3856310,
           3856541-3856629,3856720-3856872,3857047-3857181,
           3857293-3857459,3858193-3858287,3858495-3858868,
           3859101-3859374,3859464-3859531
          Length = 592

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 71  RRYLKPFKNLFNTKYFLNKILHNEIFEEVSKMFSTKKSLD 190
           +RYL   K++   KY  N+I+H  + +E  K+    K LD
Sbjct: 154 KRYLYTHKSIL-VKYNDNRIIHVNLTQESPKLLEAGKKLD 192


>11_01_0518 +
           4057428-4057538,4059609-4059801,4059921-4060025,
           4060259-4060347,4060424-4060576,4060754-4060888,
           4061241-4061407,4062129-4062223,4062367-4062740,
           4062903-4063176,4063806-4063822
          Length = 570

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 71  RRYLKPFKNLFNTKYFLNKILHNEIFEEVSKMFSTKKSLD 190
           + YL   KN+   KY  N+I+H  + +E  K+    K LD
Sbjct: 149 KHYLYTHKNIV-VKYNGNRIIHVNLTQESPKLLEAGKKLD 187


>03_01_0204 +
           1611837-1611840,1611926-1612048,1614570-1614659,
           1615529-1616095,1616235-1616959,1617065-1617252,
           1617331-1617778
          Length = 714

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 97  ILKWFQVSSKCNEIS*STDSLLCFALVPN 11
           +LKWF VSS  + I   T +L  F ++P+
Sbjct: 526 LLKWFNVSSSSSSI--LTSALTTFTMLPS 552


>10_08_0603 -
           19120434-19120538,19121209-19121310,19121430-19121462,
           19122049-19122216,19122311-19122373,19122514-19122624,
           19122926-19123035,19123150-19123446,19123632-19123710,
           19123811-19123919,19124000-19124041,19124743-19124873,
           19126150-19126797
          Length = 665

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 151 RSFKNVFYKEKLRQVPTNLQELNSSTNKQDHK 246
           R+    F   +L  +P NL+ LN++    DHK
Sbjct: 624 RTINKCFQYPRLSLIPGNLEMLNTTGLAADHK 655


>05_01_0194 +
           1406405-1406513,1406810-1407027,1407128-1407317,
           1407580-1407971,1408156-1408569
          Length = 440

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +1

Query: 172 YKEKLRQVPTNLQELNSS---TNKQDHKCY 252
           YKEK+  VP N Q+ + S   + KQD + +
Sbjct: 369 YKEKINTVPQNKQDKDPSFTGSTKQDQRSF 398


>01_06_1282 +
           35972234-35972244,35972451-35972522,35972714-35972747,
           35973247-35973360,35974833-35975036,35975290-35975449,
           35976093-35976240,35976345-35976422,35976854-35976938,
           35977142-35977213
          Length = 325

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = -1

Query: 189 SKLFFVENIF----ETSSNISLCKILFKKYFVLNKFLNGFKYRLNATR*VDRLILCYVL 25
           SK  F +++F    +TS+      ++F  YFV+ KF+    + +      + LIL  VL
Sbjct: 178 SKQAFEKSVFAKTQKTSARTEAEIVMFDSYFVVYKFIQDLHFFVTGGDEENELILASVL 236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,093,370
Number of Sequences: 37544
Number of extensions: 67277
Number of successful extensions: 181
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 14,793,348
effective HSP length: 66
effective length of database: 12,315,444
effective search space used: 258624324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)