Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_G01
(264 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50069-1|AAB37559.2| 884|Caenorhabditis elegans Hypothetical pr... 27 1.8
U64843-12|AAL08039.1| 492|Caenorhabditis elegans Hypothetical p... 27 2.4
AL132952-5|CAB61137.1| 498|Caenorhabditis elegans Hypothetical ... 26 3.2
U42844-8|AAB53820.1| 400|Caenorhabditis elegans Hypothetical pr... 25 5.6
AL021171-5|CAE17871.1| 688|Caenorhabditis elegans Hypothetical ... 25 5.6
U42436-1|AAF99891.1| 305|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z83233-6|CAB05763.1| 355|Caenorhabditis elegans Hypothetical pr... 25 9.8
Z50873-2|CAA90759.2| 620|Caenorhabditis elegans Hypothetical pr... 25 9.8
Z50873-1|CAA90760.2| 961|Caenorhabditis elegans Hypothetical pr... 25 9.8
X92565-1|CAA63315.1| 620|Caenorhabditis elegans LIN-2B protein. 25 9.8
X92564-1|CAA63314.1| 961|Caenorhabditis elegans LIN-2A protein. 25 9.8
>U50069-1|AAB37559.2| 884|Caenorhabditis elegans Hypothetical
protein C09B9.3 protein.
Length = 884
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 53 TYLVAFRRYLKPFKNLFNTKYFLNKILHNEIF 148
TY VA Y FK LF K + K++H E+F
Sbjct: 6 TYDVATESYFGFFKVLFRWKGSVWKLIHRELF 37
>U64843-12|AAL08039.1| 492|Caenorhabditis elegans Hypothetical
protein K06C4.9 protein.
Length = 492
Score = 26.6 bits (56), Expect = 2.4
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +3
Query: 90 LRIYSIQNIF*IKFYTTKYLKKFQKCFLQRKA*TSSYKFTRIKF 221
L IYS +F ++TKY K C T YK +RI F
Sbjct: 423 LVIYSASTVFIYLIFSTKYRKVLSTCV------TCGYKISRIPF 460
>AL132952-5|CAB61137.1| 498|Caenorhabditis elegans Hypothetical
protein Y51H4A.5 protein.
Length = 498
Score = 26.2 bits (55), Expect = 3.2
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 127 NFTQRNI*RSFKNVFYKEKLRQVPTNLQ 210
NF QR R+F+NVF EK R+ NL+
Sbjct: 118 NFKQRKKYRTFENVF--EKFREKTLNLE 143
>U42844-8|AAB53820.1| 400|Caenorhabditis elegans Hypothetical
protein C08A9.8 protein.
Length = 400
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 101 FNTKYFLNKILHNEIFEEVSKMFSTKKSLDKFLQIY 208
+ K K+L + + KMFS KK KFL I+
Sbjct: 95 YPNKQIKTKLLKLKSYSNKYKMFSRKKIYRKFLNIH 130
>AL021171-5|CAE17871.1| 688|Caenorhabditis elegans Hypothetical
protein H04D03.4 protein.
Length = 688
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 86 PFKNLFNTKYFLNKILHNEIFEEVSKMFSTKKSLDKFLQIYKN 214
P K + ++KY +K+L F + ++ +KSLD LQ ++N
Sbjct: 245 PTKIILHSKY-CSKVLPELTFLDCTETDLNEKSLDYLLQTHEN 286
>U42436-1|AAF99891.1| 305|Caenorhabditis elegans Hypothetical
protein C49H3.8 protein.
Length = 305
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -1
Query: 189 SKLFFVENIFETSSNISLCKILFK 118
+++FF EN+ TS ++SL K+L K
Sbjct: 173 TEIFFNENLNPTSFDLSLPKLLHK 196
>Z83233-6|CAB05763.1| 355|Caenorhabditis elegans Hypothetical
protein K06B4.6 protein.
Length = 355
Score = 24.6 bits (51), Expect = 9.8
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 68 FRRYLKPFKN-LFNTKYFLNKILH 136
FRR + FKN LFN KYF N +H
Sbjct: 42 FRRTV--FKNMLFNCKYFKNCTIH 63
>Z50873-2|CAA90759.2| 620|Caenorhabditis elegans Hypothetical
protein F17E5.1b protein.
Length = 620
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 126 KFYTTKYLKKFQKCFLQ 176
K+YTTKYL+K F Q
Sbjct: 400 KYYTTKYLQKHSALFDQ 416
>Z50873-1|CAA90760.2| 961|Caenorhabditis elegans Hypothetical
protein F17E5.1a protein.
Length = 961
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 126 KFYTTKYLKKFQKCFLQ 176
K+YTTKYL+K F Q
Sbjct: 741 KYYTTKYLQKHSALFDQ 757
>X92565-1|CAA63315.1| 620|Caenorhabditis elegans LIN-2B protein.
Length = 620
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 126 KFYTTKYLKKFQKCFLQ 176
K+YTTKYL+K F Q
Sbjct: 400 KYYTTKYLQKHSALFDQ 416
>X92564-1|CAA63314.1| 961|Caenorhabditis elegans LIN-2A protein.
Length = 961
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 126 KFYTTKYLKKFQKCFLQ 176
K+YTTKYL+K F Q
Sbjct: 741 KYYTTKYLQKHSALFDQ 757
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,075,875
Number of Sequences: 27780
Number of extensions: 79682
Number of successful extensions: 245
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 12,740,198
effective HSP length: 66
effective length of database: 10,906,718
effective search space used: 229041078
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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