Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_F24
(308 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 93 9e-21
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 58 4e-10
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 50 8e-08
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 46 2e-06
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 33 0.007
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 33 0.007
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 30 0.091
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 27 0.64
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 26 1.1
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch... 26 1.1
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom... 24 4.5
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 24 5.9
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 24 5.9
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 23 7.9
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 93.1 bits (221), Expect = 9e-21
Identities = 42/107 (39%), Positives = 55/107 (51%), Gaps = 13/107 (12%)
Frame = +2
Query: 8 GHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQT 187
GH AR+C + CY CN TGH A EC + E +CY C GH+ R+CP
Sbjct: 26 GHQARECTK-GSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAE 84
Query: 188 CYNCNKSGHISRNC-PDGTKT------------CYVCGKPGHISRDC 289
CY C + GHI+R+C +G ++ CY CG GH +RDC
Sbjct: 85 CYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDC 131
Score = 91.9 bits (218), Expect = 2e-20
Identities = 46/109 (42%), Positives = 57/109 (52%), Gaps = 13/109 (11%)
Frame = +2
Query: 8 GHFARDCKE--EADRCYRCNGTGHIARECAQSPDE---PSCYNCNKTGHIARNC-----P 157
GH A +C E + CY C GH+ R+C SP+ CY C + GHIAR+C
Sbjct: 45 GHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQ 104
Query: 158 EGGR---DNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDCDE 295
GGR SN CY C GH +R+C G K CY CGK GH S +C +
Sbjct: 105 SGGRFGGHRSNMNCYACGSYGHQARDCTMGVK-CYSCGKIGHRSFECQQ 152
Score = 89.0 bits (211), Expect = 1e-19
Identities = 40/87 (45%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Frame = +2
Query: 44 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISR 223
RCY C GH AREC + CYNCN+TGH A C E +TCY C +GH+ R
Sbjct: 18 RCYNCGENGHQARECTKGS---ICYNCNQTGHKASECTE---PQQEKTCYACGTAGHLVR 71
Query: 224 NCPDGTK-----TCYVCGKPGHISRDC 289
+CP CY CG+ GHI+RDC
Sbjct: 72 DCPSSPNPRQGAECYKCGRVGHIARDC 98
Score = 75.4 bits (177), Expect = 2e-15
Identities = 32/68 (47%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Frame = +2
Query: 107 PSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNC--PDGTKTCYVCGKPGHIS 280
P CYNC + GH AR C +G CYNCN++GH + C P KTCY CG GH+
Sbjct: 17 PRCYNCGENGHQARECTKGS------ICYNCNQTGHKASECTEPQQEKTCYACGTAGHLV 70
Query: 281 RDCDEERN 304
RDC N
Sbjct: 71 RDCPSSPN 78
Score = 61.3 bits (142), Expect = 3e-11
Identities = 31/87 (35%), Positives = 40/87 (45%), Gaps = 13/87 (14%)
Frame = +2
Query: 8 GHFARDCKEEADR-------------CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIAR 148
GH ARDC+ + CY C GH AR+C CY+C K GH +
Sbjct: 92 GHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGV---KCYSCGKIGHRSF 148
Query: 149 NCPEGGRDNSNQTCYNCNKSGHISRNC 229
C + + Q CY CN+ GHI+ NC
Sbjct: 149 ECQQA---SDGQLCYKCNQPGHIAVNC 172
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 57.6 bits (133), Expect = 4e-10
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Frame = +2
Query: 47 CYRCNGTGHIARECAQSPDEPS-CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISR 223
C+ C GHI ++C ++ D S C+ C H C + G C+ C+++GH+S
Sbjct: 79 CFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKG-PLKFAKCFICHENGHLSG 137
Query: 224 NCPDGTK-------TCYVCGKPGHISRDCDE 295
C K C C H+++DCD+
Sbjct: 138 QCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQ 168
Score = 49.6 bits (113), Expect = 1e-07
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Frame = +2
Query: 80 RECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNC----PDGTKT 247
R Q + C+ C + GHI ++CPE +DN + C+ C H C P
Sbjct: 68 RRINQRNRDKFCFACRQQGHIVQDCPE-AKDNVS-ICFRCGSKEHSLNACSKKGPLKFAK 125
Query: 248 CYVCGKPGHISRDCDE 295
C++C + GH+S C++
Sbjct: 126 CFICHENGHLSGQCEQ 141
Score = 46.8 bits (106), Expect = 7e-07
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Frame = +2
Query: 5 EGHFARDCKEEADR---CYRCNGTGHIARECA-QSPDE-PSCYNCNKTGHIARNCPEG-- 163
+GH +DC E D C+RC H C+ + P + C+ C++ GH++ C +
Sbjct: 85 QGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLSGQCEQNPK 144
Query: 164 GRDNSNQTCYNCNKSGHISRNCPDGTK 244
G C C+ H++++C K
Sbjct: 145 GLYPKGGCCKFCSSVHHLAKDCDQVNK 171
Score = 37.5 bits (83), Expect = 5e-04
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +2
Query: 173 NSNQTCYNCNKSGHISRNCP---DGTKTCYVCGKPGHISRDCDEE 298
N ++ C+ C + GHI ++CP D C+ CG H C ++
Sbjct: 74 NRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKK 118
Score = 35.5 bits (78), Expect = 0.002
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Frame = +2
Query: 44 RCYRCNGTGHIARECAQSPD--EPS---CYNCNKTGHIARNCPEGGRDN 175
+C+ C+ GH++ +C Q+P P C C+ H+A++C + +D+
Sbjct: 125 KCFICHENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNKDD 173
Score = 28.3 bits (60), Expect = 0.28
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 242 KTCYVCGKPGHISRDCDEERN 304
K C+ C + GHI +DC E ++
Sbjct: 77 KFCFACRQQGHIVQDCPEAKD 97
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 50.0 bits (114), Expect = 8e-08
Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 113 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNK-SGHISRNCPDGTKTCYVCGKPGHISRDC 289
C+NC GHI+++CP + C C HIS CP TK C CG GHI+ C
Sbjct: 89 CHNCKGNGHISKDCP-------HVLCTTCGAIDDHISVRCP-WTKKCMNCGLLGHIAARC 140
Query: 290 DEER 301
E R
Sbjct: 141 SEPR 144
Score = 46.8 bits (106), Expect = 7e-07
Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 5/98 (5%)
Frame = +2
Query: 11 HFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNK-TGHIARNCPEGGRDNSNQT 187
+F D E+ C+ C G GHI+++C C C HI+ CP +
Sbjct: 78 YFGSD-PSESIVCHNCKGNGHISKDC----PHVLCTTCGAIDDHISVRCP------WTKK 126
Query: 188 CYNCNKSGHISRNCPD----GTKTCYVCGKPGHISRDC 289
C NC GHI+ C + G + C C H S C
Sbjct: 127 CMNCGLLGHIAARCSEPRKRGPRVCRTCHTDTHTSSTC 164
Score = 45.2 bits (102), Expect = 2e-06
Identities = 33/113 (29%), Positives = 39/113 (34%), Gaps = 19/113 (16%)
Frame = +2
Query: 8 GHFARDCKEEADRCYRCNGTG-HIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQ 184
GH ++DC C C HI+ C P C NC GHIA C E R +
Sbjct: 96 GHISKDCPHVL--CTTCGAIDDHISVRC---PWTKKCMNCGLLGHIAARCSEP-RKRGPR 149
Query: 185 TCYNCNKSGHISRNCP------------------DGTKTCYVCGKPGHISRDC 289
C C+ H S CP + K CY C H DC
Sbjct: 150 VCRTCHTDTHTSSTCPLIWRYYVEKEHPVRIDVSEVRKFCYNCASDEHFGDDC 202
Score = 26.2 bits (55), Expect = 1.1
Identities = 13/42 (30%), Positives = 16/42 (38%)
Frame = +2
Query: 113 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDG 238
CYNC H +C R N ++ C NCP G
Sbjct: 189 CYNCASDEHFGDDCTLPSRSNYPESTAFC------EANCPSG 224
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 45.6 bits (103), Expect = 2e-06
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = +2
Query: 167 RDNSNQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRDC 289
RD+ NQ C NC GH +CP+ C CG GHI+RDC
Sbjct: 304 RDDENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDC 349
Score = 45.6 bits (103), Expect = 2e-06
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +2
Query: 113 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCP 232
C NC GH +CPE N C +C GHI+R+CP
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350
Score = 29.9 bits (64), Expect = 0.091
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Frame = +2
Query: 8 GHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEP 109
GH DC E + C C GHIAR+C +P
Sbjct: 318 GHRRFDCPERINHTMNIVCRHCGSIGHIARDCPVRDQQP 356
Score = 26.6 bits (56), Expect = 0.84
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Frame = +2
Query: 143 ARNCPEGGRD-NSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDCDEERN 304
A + PEG D NQ +G + D + C CG GH DC E N
Sbjct: 278 AASVPEGQNDLKRNQLRQLATLNGTLR---DDENQVCQNCGNVGHRRFDCPERIN 329
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 33.5 bits (73), Expect = 0.007
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 212 HISRNCPDGTKTCYVCGKPGHISRDC 289
H + CP TCY CGK H R+C
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 0.64
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +2
Query: 11 HFARDCKEEADRCYRCNGTGHIAREC 88
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 2.6
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2
Query: 185 TCYNCNKSGHISRNC 229
TCY C K+ H R C
Sbjct: 1805 TCYKCGKADHNLREC 1819
Score = 23.4 bits (48), Expect = 7.9
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = +2
Query: 110 SCYNCNKTGHIARNC 154
+CY C K H R C
Sbjct: 1805 TCYKCGKADHNLREC 1819
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 33.5 bits (73), Expect = 0.007
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 212 HISRNCPDGTKTCYVCGKPGHISRDC 289
H + CP TCY CGK H R+C
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 0.64
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +2
Query: 11 HFARDCKEEADRCYRCNGTGHIAREC 88
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 2.6
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2
Query: 185 TCYNCNKSGHISRNC 229
TCY C K+ H R C
Sbjct: 1805 TCYKCGKADHNLREC 1819
Score = 23.4 bits (48), Expect = 7.9
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = +2
Query: 110 SCYNCNKTGHIARNC 154
+CY C K H R C
Sbjct: 1805 TCYKCGKADHNLREC 1819
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 29.9 bits (64), Expect = 0.091
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +2
Query: 92 QSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCN-KSGHISRNCPDGTKTCYVCG 262
++ ++P+ N + N N TC NC ++ + R PDG C CG
Sbjct: 603 KNAEKPTVSNAAEDKKGDANTRRANATNPTPTCTNCQTRTTPLWRRSPDGQPLCNACG 660
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 27.1 bits (57), Expect = 0.64
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Frame = +2
Query: 80 RECAQSPDEPS-----CYNCNKTGHIARNCPEGGRDN 175
R A PD+P CY C + GH + CP N
Sbjct: 169 RIAASVPDKPPPPGYICYRCGQKGHWIQACPTNADPN 205
Score = 26.2 bits (55), Expect = 1.1
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2
Query: 188 CYNCNKSGHISRNCPDGTKTCYVCGKP 268
CY C + GH + CP Y GKP
Sbjct: 185 CYRCGQKGHWIQACPTNADPNY-DGKP 210
Score = 24.2 bits (50), Expect = 4.5
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = +2
Query: 47 CYRCNGTGHIARECAQSPD 103
CYRC GH + C + D
Sbjct: 185 CYRCGQKGHWIQACPTNAD 203
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 26.2 bits (55), Expect = 1.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 164 GRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKP 268
GR + + C NC + GH+ N K C + G+P
Sbjct: 939 GRKPTTRKCSNCGQVGHMKTN-----KICPLFGRP 968
Score = 25.8 bits (54), Expect = 1.5
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +2
Query: 92 QSPDEPSCYNCNKTGHIARN--CPEGGR 169
+ P C NC + GH+ N CP GR
Sbjct: 940 RKPTTRKCSNCGQVGHMKTNKICPLFGR 967
>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 333
Score = 26.2 bits (55), Expect = 1.1
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Frame = +2
Query: 101 DEPSCYNCNKTGHIARNCPEGGRDN----SNQTCYNCNKSGHISR 223
++P C C H+ N P + N Y CN GH R
Sbjct: 101 NQPPCEKCGGETHMTGNGPPNEEEKWNGVRNVELYQCNVCGHNQR 145
>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 24.2 bits (50), Expect = 4.5
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 161 GGRDNSNQTCYNCNKSG 211
GG++ S ++C +CN SG
Sbjct: 144 GGKEGSVKSCASCNGSG 160
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 23.8 bits (49), Expect = 5.9
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Frame = +2
Query: 176 SNQTCYNCNK-----SGHISRNCPDGTKTCYVCG 262
+ Q C C++ G NC GT C++CG
Sbjct: 364 NGQRCPTCDRVVERIDGCCHMNCLCGTHFCFLCG 397
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 23.8 bits (49), Expect = 5.9
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 230 PDGTKTCYVCGKPGHIS 280
PDGT YV +PG IS
Sbjct: 64 PDGTTMVYVFPRPGTIS 80
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 23.4 bits (48), Expect = 7.9
Identities = 10/39 (25%), Positives = 17/39 (43%)
Frame = +2
Query: 113 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNC 229
CY C ++ + NCP ++ N C S ++ C
Sbjct: 183 CYECIESDELRANCPFTDCNSINH--LTCLASSFLTEEC 219
Score = 23.4 bits (48), Expect = 7.9
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = +2
Query: 188 CYNCNKSGHISRNCP 232
CY C +S + NCP
Sbjct: 183 CYECIESDELRANCP 197
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 867,647
Number of Sequences: 5004
Number of extensions: 14162
Number of successful extensions: 118
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -