Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_F24
         (308 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              24   0.48 
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    22   1.9  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        20   5.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        20   5.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        20   5.9  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    20   7.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   7.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   7.8  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 23.8 bits (49), Expect = 0.48
 Identities = 9/33 (27%), Positives = 13/33 (39%)
 Frame = +2

Query: 107 PSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNK 205
           P C  C    H  + CP+G ++       N  K
Sbjct: 76  PICGACGDIAHTVKYCPKGTKNPGTLATVNAFK 108



 Score = 22.6 bits (46), Expect = 1.1
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +2

Query: 188 CYNCNKSGHISRNCPDGTK 244
           C  C    H  + CP GTK
Sbjct: 78  CGACGDIAHTVKYCPKGTK 96


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 270 PGLPQT*QVLVPSGQLREMCPDLLQL*QVWLELSRPP 160
           PGL    Q L+ SGQL  +  D     + +   S+PP
Sbjct: 56  PGLAAVLQYLIRSGQLNIISSDHDDSDEEYAANSQPP 92


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 140 IARNCPEGGRDNSNQ 184
           +A  CP+GGR   N+
Sbjct: 608 LALICPDGGRAEINE 622


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 140 IARNCPEGGRDNSNQ 184
           +A  CP+GGR   N+
Sbjct: 608 LALICPDGGRAEINE 622


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 140 IARNCPEGGRDNSNQ 184
           +A  CP+GGR   N+
Sbjct: 608 LALICPDGGRAEINE 622


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
 Frame = +2

Query: 71  HIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQ---TCYNCNKSGHISRN 226
           H+     +  D   C  C KT  +        R ++ +    C  C+KS  +  N
Sbjct: 80  HLRSHGKEGEDPYRCNICGKTFAVPARLTRHYRTHTGEKPYQCEYCSKSFSVKEN 134


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +2

Query: 185 TCYNCNKSGHISRNCPD 235
           TC   NK GH +R   D
Sbjct: 588 TCSARNKQGHSARRSGD 604


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +2

Query: 185 TCYNCNKSGHISRNCPD 235
           TC   NK GH +R   D
Sbjct: 588 TCSARNKQGHSARRSGD 604


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,008
Number of Sequences: 438
Number of extensions: 1323
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)