Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_F23
         (283 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   0.38 
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    25   1.6  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    25   1.6  
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|...    23   6.3  
SPBC1289.05c |vma10||V-type ATPase subunit G|Schizosaccharomyces...    23   6.3  
SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyce...    23   8.3  

>SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 27.5 bits (58), Expect = 0.38
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 102 KTHKNYVDQDRVREPRHESIKRYEE 28
           KTH  +++ D V E R  SIK Y++
Sbjct: 188 KTHVYFINSDEVAEQRAVSIKAYQQ 212


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 109 GESDPRNPTASSC*KTRCGESQRGKEAKSKTPKAG 213
           GES+  N T++S  K R     + K+AK +T K+G
Sbjct: 297 GESNKDNNTSTSKHKKRPKRLSKFKQAKLETKKSG 331


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 112  ESDPRNPTASSC*KTRCGESQRGKEAKSKTPKAGQGGG 225
            E+DP+NP A S      G +   +++K++ PK     G
Sbjct: 1284 ENDPKNPKAGS---QGSGNTSASEDSKTEKPKTRTNNG 1318


>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 78  QDRVREPRHESIKRYEESPRAEFMQP 1
           ++ V  PR  S+  YE+ P   F  P
Sbjct: 183 EEHVSVPRESSLFTYEDDPLPSFPSP 208


>SPBC1289.05c |vma10||V-type ATPase subunit G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 108

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 13/19 (68%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = +2

Query: 107 MASQTQ-GIQQLLAAEKRA 160
           M++QT  GIQQLL AEK A
Sbjct: 1   MSAQTNSGIQQLLEAEKVA 19


>SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 11  NSARGDSSYRFIDSCLGSRT 70
           +S+R DSS  F+D  L  RT
Sbjct: 78  DSSRSDSSSVFLDKVLSDRT 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 928,769
Number of Sequences: 5004
Number of extensions: 14854
Number of successful extensions: 41
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)