Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_F23
(283 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0500 + 19735879-19736144,19736325-19736664,19738181-19738831 27 1.7
03_06_0507 + 34404843-34404968,34405091-34405151,34405260-344052... 26 3.9
01_02_0016 - 10199085-10199170,10200649-10201456 26 3.9
08_02_0701 + 20177860-20178603 26 5.2
04_04_0101 - 22800360-22800653,22801088-22801249 26 5.2
12_02_1069 + 25801309-25801433,25802429-25802620,25803130-258031... 25 6.8
11_06_0506 - 24380469-24380632,24381737-24383893,24384488-243845... 25 6.8
10_08_0067 + 14620852-14621454 25 6.8
08_01_0874 + 8575718-8576422,8576603-8576662,8576799-8576945,857... 25 6.8
07_01_0217 + 1620625-1621419,1621982-1622152,1622581-1622865,162... 25 6.8
06_01_0889 - 6807449-6809257 25 6.8
04_04_0915 - 29385926-29385952,29386069-29386285,29386367-293866... 25 6.8
06_03_1080 + 27436389-27436742,27437573-27437804,27437911-274381... 25 9.0
04_04_0169 + 23266110-23266439,23267208-23267288,23267399-232675... 25 9.0
03_05_0025 + 19938138-19938306,19938899-19939505,19939613-199397... 25 9.0
>12_02_0500 + 19735879-19736144,19736325-19736664,19738181-19738831
Length = 418
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +1
Query: 112 ESDPRNPTASSC*KTRCG-ESQRGKEAKSKTPK 207
E +PT SSC +CG + K+ K+KT K
Sbjct: 9 EETMASPTTSSCGTCKCGANDDKAKKMKTKTKK 41
>03_06_0507 +
34404843-34404968,34405091-34405151,34405260-34405296,
34405365-34405386,34405861-34405957,34406037-34406180,
34407034-34407173,34408205-34408255,34408347-34408429,
34408515-34408590,34408646-34408760,34409080-34409575,
34409682-34409895,34410000-34410070,34410527-34410695,
34410787-34410916,34411330-34411742,34411839-34412039
Length = 881
Score = 26.2 bits (55), Expect = 3.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 130 PTASSC*KTRCGESQRGKEAKSKTPKAGQGG 222
PT K E +RGK K+K AG+GG
Sbjct: 828 PTKRKNRKDSHSEQRRGKAPKTKKEPAGEGG 858
>01_02_0016 - 10199085-10199170,10200649-10201456
Length = 297
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 106 YGESDPRNPTASSC*KTRCGESQRGKEAKS 195
YG+ DPRNP A S + G RG A S
Sbjct: 107 YGDDDPRNPQAPSS-ASLPGTPDRGAPAPS 135
>08_02_0701 + 20177860-20178603
Length = 247
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 160 CGESQRGKEAKSKTPKAGQGGG 225
CGE +RG+ + K QGGG
Sbjct: 190 CGEIRRGEHTQDKEDDDDQGGG 211
>04_04_0101 - 22800360-22800653,22801088-22801249
Length = 151
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Frame = -3
Query: 254 PVCTSQLHLEPP--PWPALG 201
PVCT+ LHL PWP G
Sbjct: 98 PVCTANLHLHRSIRPWPTNG 117
>12_02_1069 +
25801309-25801433,25802429-25802620,25803130-25803159,
25803426-25803500,25803599-25804373,25804549-25804614,
25804746-25804811,25804898-25805140,25805407-25805502
Length = 555
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -3
Query: 251 VCTSQLHLEPPPWPALGVLLFASL 180
V Q + PPPWPA G F +
Sbjct: 231 VAAFQSRMMPPPWPARGKAEFGDV 254
>11_06_0506 -
24380469-24380632,24381737-24383893,24384488-24384541,
24384543-24384597,24384914-24384916,24385192-24385231,
24385576-24385632,24388124-24388412,24389764-24389771,
24390633-24390688,24391207-24391488,24391651-24391811,
24391887-24392121,24392860-24392943,24393022-24393117,
24393333-24394055,24396523-24396987
Length = 1642
Score = 25.4 bits (53), Expect = 6.8
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 115 SDPRNPTASSC*KTRCGE-SQRGKEAKSKTPKAGQGGG 225
+ P +PTAS C TR E + R A P G GGG
Sbjct: 18 ASPPSPTASYCMGTRPEELTARLAAAAGGRPVGGGGGG 55
>10_08_0067 + 14620852-14621454
Length = 200
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 160 CGESQRGKEAKSKTPKAGQGGGSR 231
CG +R A++K G GGGSR
Sbjct: 110 CGGGRRRHGAEAKEKAGGWGGGSR 133
>08_01_0874 +
8575718-8576422,8576603-8576662,8576799-8576945,
8577390-8577527
Length = 349
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +1
Query: 106 YGESDPRNPTASSC*KTRCGESQ-RGKEAKSKTP 204
Y E PR+ + C +T C R KE K + P
Sbjct: 20 YREDSPRHKATACCTRTGCSSKLFRDKEKKMRRP 53
>07_01_0217 +
1620625-1621419,1621982-1622152,1622581-1622865,
1623113-1623262
Length = 466
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 269 TAFHAPVCTSQLHLEPPPWPALGVLLFASL 180
TA H + S LHL PPP A L A++
Sbjct: 95 TAIHLRL-VSHLHLRPPPGGAFAALATATI 123
>06_01_0889 - 6807449-6809257
Length = 602
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = -3
Query: 260 HAPVCTSQLHLEPPPWPALGVLLFASLP 177
H P L P P PAL LFASLP
Sbjct: 53 HLPYAARLLAHHPDPRPALLNPLFASLP 80
>04_04_0915 -
29385926-29385952,29386069-29386285,29386367-29386622,
29386745-29387072,29387157-29387587,29388014-29388163,
29388212-29388398,29388709-29388750,29389007-29389555,
29389778-29390032
Length = 813
Score = 25.4 bits (53), Expect = 6.8
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -1
Query: 175 ADFLRSAFFSS*KLLDSLGLTRHIENTQKLCRPRPS 68
ADF RS F + L SLG +H+ N Q RP S
Sbjct: 543 ADFGRSVF----ERLSSLGYNKHLLNIQYRMRPEIS 574
>06_03_1080 +
27436389-27436742,27437573-27437804,27437911-27438159,
27438467-27438517,27438676-27438936,27439019-27439071,
27439201-27439315,27441666-27441920,27442423-27443480
Length = 875
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 172 QRGKEAKSKTPKAGQGGGSR 231
+RG+E++ K G GGG R
Sbjct: 73 ERGQESRRKNSSGGGGGGGR 92
>04_04_0169 +
23266110-23266439,23267208-23267288,23267399-23267538,
23267815-23268070
Length = 268
Score = 25.0 bits (52), Expect = 9.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -3
Query: 248 CTSQLHLEPPPWPALG 201
C +Q++L PP PA+G
Sbjct: 213 CATQIYLRNPPQPAIG 228
>03_05_0025 +
19938138-19938306,19938899-19939505,19939613-19939723,
19941891-19941972,19942033-19942080
Length = 338
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 66 REPRHESIKRYEESPRAEFMQ 4
REP E + +EES R E+ Q
Sbjct: 10 REPTPEPVSEHEESSRQEYAQ 30
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,321,200
Number of Sequences: 37544
Number of extensions: 110087
Number of successful extensions: 358
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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