Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_F23
(283 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88173-4|AAK21386.1| 126|Caenorhabditis elegans Vacuolar h atpa... 45 1e-05
Z93379-4|CAB07588.1| 306|Caenorhabditis elegans Hypothetical pr... 27 2.1
AF003739-3|AAB58065.1| 166|Caenorhabditis elegans Human emerin ... 26 4.8
Z49912-9|CAA90141.2| 1067|Caenorhabditis elegans Hypothetical pr... 25 6.3
Z49912-8|CAE54898.1| 1067|Caenorhabditis elegans Hypothetical pr... 25 6.3
Z49907-13|CAA90091.2| 1067|Caenorhabditis elegans Hypothetical p... 25 6.3
Z49907-12|CAE54883.1| 1067|Caenorhabditis elegans Hypothetical p... 25 6.3
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p... 25 6.3
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p... 25 6.3
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p... 25 6.3
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p... 25 6.3
>U88173-4|AAK21386.1| 126|Caenorhabditis elegans Vacuolar h atpase
protein 10 protein.
Length = 126
Score = 44.8 bits (101), Expect = 1e-05
Identities = 21/23 (91%), Positives = 23/23 (100%)
Frame = +2
Query: 107 MASQTQGIQQLLAAEKRAAEKVS 175
MASQTQGIQQLLAAEKRAAEK++
Sbjct: 1 MASQTQGIQQLLAAEKRAAEKIN 23
>Z93379-4|CAB07588.1| 306|Caenorhabditis elegans Hypothetical
protein F21H7.5 protein.
Length = 306
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 103 RYGESDPRNPTASSC*KTRCGESQRGKEAKSKTPKAGQGG 222
R G+S T S + G+S RGK +KSK P + G
Sbjct: 57 RSGKSGKSGKTGKS---GKSGKSSRGKSSKSKKPSKSKAG 93
>AF003739-3|AAB58065.1| 166|Caenorhabditis elegans Human emerin
homolog protein 1 protein.
Length = 166
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 197 LLFASLPR*LSPQRVFQQLEAVGFLGSDSP 108
L+ +S P+ PQRVFQ + A + SP
Sbjct: 61 LIISSSPKKSPPQRVFQNVSAATAAATTSP 90
>Z49912-9|CAA90141.2| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6a protein.
Length = 1067
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = -3
Query: 242 SQLHLEPPPWPALGVLLFASLPR*LSPQRVFQQLEAVGFLGSDSPYRKHTKTM*TKTE 69
+QL++E G ++ SLP S QR+++ + G + D ++ TK + T +E
Sbjct: 445 TQLYMETQ---GTGPIVTLSLPILTSEQRIWRDQKLAGVVAIDISIKEFTKHLPTSSE 499
>Z49912-8|CAE54898.1| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6b protein.
Length = 1067
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = -3
Query: 242 SQLHLEPPPWPALGVLLFASLPR*LSPQRVFQQLEAVGFLGSDSPYRKHTKTM*TKTE 69
+QL++E G ++ SLP S QR+++ + G + D ++ TK + T +E
Sbjct: 445 TQLYMETQ---GTGPIVTLSLPILTSEQRIWRDQKLAGVVAIDISIKEFTKHLPTSSE 499
>Z49907-13|CAA90091.2| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6a protein.
Length = 1067
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = -3
Query: 242 SQLHLEPPPWPALGVLLFASLPR*LSPQRVFQQLEAVGFLGSDSPYRKHTKTM*TKTE 69
+QL++E G ++ SLP S QR+++ + G + D ++ TK + T +E
Sbjct: 445 TQLYMETQ---GTGPIVTLSLPILTSEQRIWRDQKLAGVVAIDISIKEFTKHLPTSSE 499
>Z49907-12|CAE54883.1| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6b protein.
Length = 1067
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = -3
Query: 242 SQLHLEPPPWPALGVLLFASLPR*LSPQRVFQQLEAVGFLGSDSPYRKHTKTM*TKTE 69
+QL++E G ++ SLP S QR+++ + G + D ++ TK + T +E
Sbjct: 445 TQLYMETQ---GTGPIVTLSLPILTSEQRIWRDQKLAGVVAIDISIKEFTKHLPTSSE 499
>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
protein F35D11.11a protein.
Length = 1840
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +3
Query: 150 KNALRRKSARQGS--EKQNA*SRPRRRLKMKLRSTDRSVKG 266
+ ALR K + S EK+ + RR +LR T RS+KG
Sbjct: 468 EEALRSKDTEERSRFEKERSEREKIRRESDELRETQRSLKG 508
>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
protein F35D11.11c protein.
Length = 1898
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +3
Query: 150 KNALRRKSARQGS--EKQNA*SRPRRRLKMKLRSTDRSVKG 266
+ ALR K + S EK+ + RR +LR T RS+KG
Sbjct: 468 EEALRSKDTEERSRFEKERSEREKIRRESDELRETQRSLKG 508
>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
protein F35D11.11d protein.
Length = 1671
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +3
Query: 150 KNALRRKSARQGS--EKQNA*SRPRRRLKMKLRSTDRSVKG 266
+ ALR K + S EK+ + RR +LR T RS+KG
Sbjct: 228 EEALRSKDTEERSRFEKERSEREKIRRESDELRETQRSLKG 268
>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
protein F35D11.11b protein.
Length = 1911
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +3
Query: 150 KNALRRKSARQGS--EKQNA*SRPRRRLKMKLRSTDRSVKG 266
+ ALR K + S EK+ + RR +LR T RS+KG
Sbjct: 468 EEALRSKDTEERSRFEKERSEREKIRRESDELRETQRSLKG 508
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,199,145
Number of Sequences: 27780
Number of extensions: 84620
Number of successful extensions: 259
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 259761072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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