Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_F22
(440 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q3UA25 Cluster: Bone marrow macrophage cDNA, RIKEN full... 248 5e-65
UniRef50_P62241 Cluster: 40S ribosomal protein S8; n=93; Eukaryo... 248 5e-65
UniRef50_Q8MLY8 Cluster: 40S ribosomal protein S8; n=82; Eukaryo... 220 1e-56
UniRef50_Q5JR95 Cluster: Ribosomal protein S8; n=8; Euteleostomi... 188 3e-47
UniRef50_Q08069 Cluster: 40S ribosomal protein S8; n=21; Eukaryo... 186 2e-46
UniRef50_Q4N3P0 Cluster: 40S ribosomal protein S8; n=4; Eukaryot... 183 2e-45
UniRef50_P25204 Cluster: 40S ribosomal protein S8; n=19; Eukaryo... 159 2e-38
UniRef50_Q6QP50 Cluster: Putative 40S ribosomal protein S8; n=1;... 144 7e-34
UniRef50_UPI000049933B Cluster: conserved hypothetical protein; ... 142 2e-33
UniRef50_A6RAQ0 Cluster: Ribosomal protein S8; n=1; Ajellomyces ... 116 3e-25
UniRef50_Q7R1W8 Cluster: Ribosomal protein S8; n=1; Giardia lamb... 114 9e-25
UniRef50_Q8SWC9 Cluster: Ribosomal protein S8; n=1; Encephalitoz... 102 4e-21
UniRef50_Q9AW20 Cluster: 40S ribosomal protein S8; n=1; Guillard... 98 8e-20
UniRef50_Q3LVX9 Cluster: Ribosomal protein S8; n=1; Bigelowiella... 76 4e-13
UniRef50_A3CSQ2 Cluster: 30S ribosomal protein S8e; n=5; Archaea... 67 1e-10
UniRef50_Q6L0D3 Cluster: 30S ribosomal protein S8e; n=7; Archaea... 67 2e-10
UniRef50_Q9HJD0 Cluster: 30S ribosomal protein S8e; n=5; Euryarc... 65 7e-10
UniRef50_Q0W1L5 Cluster: 30S ribosomal protein S8e; n=3; Euryarc... 59 5e-08
UniRef50_O58830 Cluster: 30S ribosomal protein S8e; n=6; Archaea... 58 6e-08
UniRef50_Q980W3 Cluster: 30S ribosomal protein S8e; n=4; Archaea... 55 6e-07
UniRef50_Q8TV55 Cluster: 30S ribosomal protein S8e; n=1; Methano... 55 8e-07
UniRef50_P61300 Cluster: 30S ribosomal protein S8e; n=5; Methano... 53 2e-06
UniRef50_A0RXG5 Cluster: Ribosomal protein S8E; n=2; Thermoprote... 52 5e-06
UniRef50_Q9YDY0 Cluster: 30S ribosomal protein S8e; n=3; Desulfu... 50 2e-05
UniRef50_Q8ZTB8 Cluster: 30S ribosomal protein S8e; n=6; Archaea... 49 4e-05
UniRef50_A1RX37 Cluster: Ribosomal protein S8e; n=1; Thermofilum... 41 0.014
UniRef50_Q4SV68 Cluster: Chromosome undetermined SCAF13783, whol... 38 0.13
UniRef50_Q2GJW1 Cluster: Phage uncharacterized protein; n=1; Ana... 35 0.67
UniRef50_Q5C1R4 Cluster: SJCHGC03085 protein; n=1; Schistosoma j... 35 0.67
UniRef50_Q2W531 Cluster: TPR repeat; n=3; Magnetospirillum|Rep: ... 35 0.89
UniRef50_A0IYI1 Cluster: Putative uncharacterized protein; n=1; ... 34 1.2
UniRef50_UPI0000F2CAD6 Cluster: PREDICTED: hypothetical protein;... 33 2.1
UniRef50_UPI0000DD863F Cluster: PREDICTED: hypothetical protein;... 33 2.1
UniRef50_Q9VL72 Cluster: CG5899-PA, isoform A; n=5; Diptera|Rep:... 33 2.7
UniRef50_UPI0000585237 Cluster: PREDICTED: similar to cardioacce... 33 3.6
UniRef50_Q7XEZ3 Cluster: Putative uncharacterized protein; n=1; ... 33 3.6
UniRef50_Q473M5 Cluster: Putative uncharacterized protein; n=3; ... 32 6.3
UniRef50_A0P207 Cluster: Putative uncharacterized protein; n=1; ... 31 8.3
UniRef50_A5E7M6 Cluster: Putative uncharacterized protein; n=1; ... 31 8.3
>UniRef50_Q3UA25 Cluster: Bone marrow macrophage cDNA, RIKEN
full-length enriched library, clone:I830031J02
product:ribosomal protein S8, full insert sequence; n=9;
Deuterostomia|Rep: Bone marrow macrophage cDNA, RIKEN
full-length enriched library, clone:I830031J02
product:ribosomal protein S8, full insert sequence - Mus
musculus (Mouse)
Length = 152
Score = 248 bits (606), Expect = 5e-65
Identities = 112/137 (81%), Positives = 121/137 (88%)
Frame = +3
Query: 30 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 209
MGISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 210 DTGNFAWGSECSTRKTRIIDVVYNASNNEWVRTKTLVKNAIVVVDATPFRQWYESHYLLP 389
D GNF+WGSEC TRKTRIIDVVYNASNNE VRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 390 LGRKTGAKLTEAEEAII 440
LGRK GAKLT EE I+
Sbjct: 121 LGRKKGAKLTPEEEEIL 137
>UniRef50_P62241 Cluster: 40S ribosomal protein S8; n=93;
Eukaryota|Rep: 40S ribosomal protein S8 - Homo sapiens
(Human)
Length = 208
Score = 248 bits (606), Expect = 5e-65
Identities = 112/137 (81%), Positives = 121/137 (88%)
Frame = +3
Query: 30 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 209
MGISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 210 DTGNFAWGSECSTRKTRIIDVVYNASNNEWVRTKTLVKNAIVVVDATPFRQWYESHYLLP 389
D GNF+WGSEC TRKTRIIDVVYNASNNE VRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 390 LGRKTGAKLTEAEEAII 440
LGRK GAKLT EE I+
Sbjct: 121 LGRKKGAKLTPEEEEIL 137
>UniRef50_Q8MLY8 Cluster: 40S ribosomal protein S8; n=82;
Eukaryota|Rep: 40S ribosomal protein S8 - Drosophila
melanogaster (Fruit fly)
Length = 208
Score = 220 bits (537), Expect = 1e-56
Identities = 103/134 (76%), Positives = 114/134 (85%)
Frame = +3
Query: 30 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 209
MGISRD HKRRATGGKR +RKKRK+ELGRPAANTKLG R+H VR+RGGNTK RALRL
Sbjct: 1 MGISRDSAHKRRATGGKRKSLRKKRKFELGRPAANTKLGSGRVHKVRTRGGNTKLRALRL 60
Query: 210 DTGNFAWGSECSTRKTRIIDVVYNASNNEWVRTKTLVKNAIVVVDATPFRQWYESHYLLP 389
+TGNFAW SE RKTRI DVVYNASNNE VRTKTLVKN+IVV+DATPFRQWYE+HY+LP
Sbjct: 61 ETGNFAWASEGVARKTRIADVVYNASNNELVRTKTLVKNSIVVIDATPFRQWYEAHYVLP 120
Query: 390 LGRKTGAKLTEAEE 431
LGRK K + E+
Sbjct: 121 LGRKRNPKHAQKED 134
>UniRef50_Q5JR95 Cluster: Ribosomal protein S8; n=8;
Euteleostomi|Rep: Ribosomal protein S8 - Homo sapiens
(Human)
Length = 188
Score = 188 bits (459), Expect = 3e-47
Identities = 96/137 (70%), Positives = 104/137 (75%)
Frame = +3
Query: 30 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 209
MGISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGG
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG--------- 51
Query: 210 DTGNFAWGSECSTRKTRIIDVVYNASNNEWVRTKTLVKNAIVVVDATPFRQWYESHYLLP 389
C TRKTRIIDVVYNASNNE VRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 52 ----------C-TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 100
Query: 390 LGRKTGAKLTEAEEAII 440
LGRK GAKLT EE I+
Sbjct: 101 LGRKKGAKLTPEEEEIL 117
>UniRef50_Q08069 Cluster: 40S ribosomal protein S8; n=21;
Eukaryota|Rep: 40S ribosomal protein S8 - Zea mays
(Maize)
Length = 221
Score = 186 bits (453), Expect = 2e-46
Identities = 90/136 (66%), Positives = 105/136 (77%), Gaps = 1/136 (0%)
Frame = +3
Query: 30 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALR 206
MGISRD HKRRATGGK+ RKKRKYELGR ANTKL + + VR RGGN K+RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60
Query: 207 LDTGNFAWGSECSTRKTRIIDVVYNASNNEWVRTKTLVKNAIVVVDATPFRQWYESHYLL 386
LDTGN++WGSE TRKTRI+DVVYNASNNE VRT+TLVK+AIV VDA PF+QWY +HY +
Sbjct: 61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120
Query: 387 PLGRKTGAKLTEAEEA 434
+GRK + + A
Sbjct: 121 DIGRKKKTPAAKKDNA 136
>UniRef50_Q4N3P0 Cluster: 40S ribosomal protein S8; n=4;
Eukaryota|Rep: 40S ribosomal protein S8 - Theileria
parva
Length = 188
Score = 183 bits (445), Expect = 2e-45
Identities = 84/125 (67%), Positives = 103/125 (82%)
Frame = +3
Query: 30 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 209
MGISRD HKRR TGG+ +KKRKYELGRP++NTKLG + + VR RGGN K+RALRL
Sbjct: 1 MGISRDSRHKRRLTGGRYPVHKKKRKYELGRPSSNTKLGSKLVRKVRCRGGNLKFRALRL 60
Query: 210 DTGNFAWGSECSTRKTRIIDVVYNASNNEWVRTKTLVKNAIVVVDATPFRQWYESHYLLP 389
D+GNF+WGS+ TRKTR++DVVYNAS+NE VRTKTLVKNAIV VD TPF+ W+++HY L
Sbjct: 61 DSGNFSWGSQNVTRKTRVMDVVYNASSNELVRTKTLVKNAIVTVDPTPFKLWFKTHYGLE 120
Query: 390 LGRKT 404
LG+ +
Sbjct: 121 LGKSS 125
>UniRef50_P25204 Cluster: 40S ribosomal protein S8; n=19;
Eukaryota|Rep: 40S ribosomal protein S8 - Leishmania
major
Length = 220
Score = 159 bits (386), Expect = 2e-38
Identities = 79/135 (58%), Positives = 93/135 (68%), Gaps = 1/135 (0%)
Frame = +3
Query: 30 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 209
MGI R HKR+ TGGK RK+ K ELGR ANT+LG +R+ VR+RGGN K RALRL
Sbjct: 1 MGIVRSRLHKRKITGGKTKIHRKRMKAELGRLPANTRLGARRVSPVRARGGNFKIRALRL 60
Query: 210 DTGNFAWGSECSTRKTRIIDVVYNASNNEWVRTKTLVKNAIVVVDATPFRQWYESHYLLP 389
DTGNFAW SE + R++DVVYNA++NE VRTKTLVKN IV VDA PF++WY HY +
Sbjct: 61 DTGNFAWASEAIAHRVRLLDVVYNATSNELVRTKTLVKNCIVAVDAAPFKRWYAKHYGID 120
Query: 390 L-GRKTGAKLTEAEE 431
L K K A E
Sbjct: 121 LDADKKSTKAAVAAE 135
>UniRef50_Q6QP50 Cluster: Putative 40S ribosomal protein S8; n=1;
Zea mays|Rep: Putative 40S ribosomal protein S8 - Zea
mays (Maize)
Length = 245
Score = 144 bits (349), Expect = 7e-34
Identities = 68/120 (56%), Positives = 90/120 (75%), Gaps = 1/120 (0%)
Frame = +3
Query: 75 GKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALRLDTGNFAWGSECSTR 251
G P+++++ YELGR ANTKL + + VR RGGNTK+RALR DT N++WGSE TR
Sbjct: 113 GPFCPLQEEQGYELGRQPANTKLSSNKTVRRVRVRGGNTKWRALRFDTCNYSWGSEALTR 172
Query: 252 KTRIIDVVYNASNNEWVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRKTGAKLTEAEE 431
KTRI+DVVY A+NNE VRT+TLVK+AIV VDA PF+QWY +HY + +GRK + + ++
Sbjct: 173 KTRILDVVYIATNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKVSVAKKDD 232
>UniRef50_UPI000049933B Cluster: conserved hypothetical protein;
n=3; Entamoeba histolytica HM-1:IMSS|Rep: conserved
hypothetical protein - Entamoeba histolytica HM-1:IMSS
Length = 237
Score = 142 bits (345), Expect = 2e-33
Identities = 66/117 (56%), Positives = 87/117 (74%)
Frame = +3
Query: 30 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 209
MGI+RD HKRRATGGK+ ++KK+K +GR ANT+LG R+H VR R G K RALRL
Sbjct: 1 MGITRDSRHKRRATGGKKNSMQKKKKNTMGRQPANTRLGAIRVHDVRCRYGIIKRRALRL 60
Query: 210 DTGNFAWGSECSTRKTRIIDVVYNASNNEWVRTKTLVKNAIVVVDATPFRQWYESHY 380
+ GNF+W S+ T+ T+I++VVYNAS+N++VRT TLVK AI+ +D PFR W+ Y
Sbjct: 61 ENGNFSWASQSITKGTKILNVVYNASDNDFVRTNTLVKGAIIEIDPAPFRLWFLKFY 117
>UniRef50_A6RAQ0 Cluster: Ribosomal protein S8; n=1; Ajellomyces
capsulatus NAm1|Rep: Ribosomal protein S8 - Ajellomyces
capsulatus NAm1
Length = 141
Score = 116 bits (278), Expect = 3e-25
Identities = 53/81 (65%), Positives = 64/81 (79%)
Frame = +3
Query: 30 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 209
MGISRD HKR ATG KR+ RKKR +E GR ANT++GP+RIHLVR+RGGN K+R LRL
Sbjct: 1 MGISRDSRHKRSATGAKRSHYRKKRAFEKGRQPANTRIGPKRIHLVRTRGGNQKFRGLRL 60
Query: 210 DTGNFAWGSECSTRKTRIIDV 272
++GNF+WGSE RK R+I V
Sbjct: 61 ESGNFSWGSEGIARKVRVIVV 81
>UniRef50_Q7R1W8 Cluster: Ribosomal protein S8; n=1; Giardia lamblia
ATCC 50803|Rep: Ribosomal protein S8 - Giardia lamblia
ATCC 50803
Length = 174
Score = 114 bits (274), Expect = 9e-25
Identities = 60/119 (50%), Positives = 75/119 (63%), Gaps = 9/119 (7%)
Frame = +3
Query: 30 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKL---------GPQRIHLVRSRGG 182
MGI+ D +KR TG + KKRKY LGR ANTKL Q+I +R RGG
Sbjct: 1 MGITHDKMYKRSKTGAVQGKWHKKRKYNLGRQPANTKLIVKVTSKKNEGQKISTIRCRGG 60
Query: 183 NTKYRALRLDTGNFAWGSECSTRKTRIIDVVYNASNNEWVRTKTLVKNAIVVVDATPFR 359
N K RALRL G+FAWGS + K RI+ VVYN+++NE VRT TLVK +V +D+ PF+
Sbjct: 61 NIKRRALRLSHGSFAWGSADISHKARILQVVYNSTSNELVRTNTLVKGCVVQIDSAPFK 119
>UniRef50_Q8SWC9 Cluster: Ribosomal protein S8; n=1; Encephalitozoon
cuniculi|Rep: Ribosomal protein S8 - Encephalitozoon
cuniculi
Length = 173
Score = 102 bits (244), Expect = 4e-21
Identities = 50/110 (45%), Positives = 71/110 (64%)
Frame = +3
Query: 30 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 209
MGI+ HKRR TG K RKKR G ++TK+G +++ VR RGGN KY+ALRL
Sbjct: 1 MGINHRGDHKRRKTGAKAVISRKKRNNRAGSQPSSTKIGERKVTPVRVRGGNRKYKALRL 60
Query: 210 DTGNFAWGSECSTRKTRIIDVVYNASNNEWVRTKTLVKNAIVVVDATPFR 359
D G+F + + R +++ VVY+ S+NE VRT TL K+++V + A PF+
Sbjct: 61 DMGHFKFITTGKFRMAKLLQVVYHPSSNELVRTNTLTKSSVVKISAEPFK 110
>UniRef50_Q9AW20 Cluster: 40S ribosomal protein S8; n=1; Guillardia
theta|Rep: 40S ribosomal protein S8 - Guillardia theta
(Cryptomonas phi)
Length = 178
Score = 97.9 bits (233), Expect = 8e-20
Identities = 50/105 (47%), Positives = 70/105 (66%)
Frame = +3
Query: 30 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 209
MGI+R+ HKR++TGG ++ RKKR + GR +NTK+G + + +R RGG K RAL L
Sbjct: 1 MGINREGLHKRKSTGGLKSCWRKKRNHAKGRQPSNTKIGRRCVVKLRVRGGGVKTRALFL 60
Query: 210 DTGNFAWGSECSTRKTRIIDVVYNASNNEWVRTKTLVKNAIVVVD 344
GNF++ S T K +I+ V +N S+NE VRT TL K +IV +D
Sbjct: 61 SYGNFSFVSIQRTFKAKILSVAFNESSNELVRTNTLTKGSIVYLD 105
>UniRef50_Q3LVX9 Cluster: Ribosomal protein S8; n=1; Bigelowiella
natans|Rep: Ribosomal protein S8 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 176
Score = 75.8 bits (178), Expect = 4e-13
Identities = 36/101 (35%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Frame = +3
Query: 57 KRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALRLDTGNFAWG 233
K++ TGGK+ I KK+ + G NT L I + R RGGN K++A+ L G+F W
Sbjct: 3 KKKLTGGKKKKISKKKNHSKGNNPTNTVLRRANFIKMTRVRGGNFKFKAISLGKGSFQWK 62
Query: 234 SECSTRKTRIIDVVYNASNNEWVRTKTLVKNAIVVVDATPF 356
+ ++ ++I+ V+YN +N + V+ + L K I+ +D+ PF
Sbjct: 63 TMQLSKNSKILSVLYNQANLKLVQKRNLSKGTIIKIDSMPF 103
>UniRef50_A3CSQ2 Cluster: 30S ribosomal protein S8e; n=5;
Archaea|Rep: 30S ribosomal protein S8e - Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Length = 125
Score = 67.3 bits (157), Expect = 1e-10
Identities = 35/92 (38%), Positives = 56/92 (60%)
Frame = +3
Query: 60 RRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSE 239
R+ +GG+ + K++ E+GR A T +G +R +VR+ GGN K RALRL+ + +
Sbjct: 9 RKPSGGRYHTSQGKKRTEIGRAPAETHIGEERRRIVRTFGGNQKVRALRLEYATVSNPAT 68
Query: 240 CSTRKTRIIDVVYNASNNEWVRTKTLVKNAIV 335
T+KT+I V N+++ +VR K L K AI+
Sbjct: 69 GETKKTKIEAVEANSADPNYVRRKLLTKGAII 100
>UniRef50_Q6L0D3 Cluster: 30S ribosomal protein S8e; n=7;
Archaea|Rep: 30S ribosomal protein S8e - Picrophilus
torridus
Length = 125
Score = 66.9 bits (156), Expect = 2e-10
Identities = 32/92 (34%), Positives = 53/92 (57%)
Frame = +3
Query: 60 RRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSE 239
R+ +GGK P KR+YELGR T+LG + + +RS GGN+K+ LR D N +
Sbjct: 10 RKPSGGKLRPNHSKRRYELGREPTLTRLGDRELRKIRSYGGNSKFALLRCDYANVYNPKD 69
Query: 240 CSTRKTRIIDVVYNASNNEWVRTKTLVKNAIV 335
+TRK +I V N+++ +V+ + + ++
Sbjct: 70 KTTRKVKINTVKENSADPHYVQRNIMNRGTVI 101
>UniRef50_Q9HJD0 Cluster: 30S ribosomal protein S8e; n=5;
Euryarchaeota|Rep: 30S ribosomal protein S8e -
Thermoplasma acidophilum
Length = 127
Score = 64.9 bits (151), Expect = 7e-10
Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Frame = +3
Query: 60 RRATGGKRAPIRKKRKYELGRPAANTKLGPQ-RIHLVRSRGGNTKYRALRLDTGNFAWGS 236
++ATGG RKKR++ELGR TKLG + ++R+ GGNTK +T N S
Sbjct: 10 KKATGGSLKQSRKKRRFELGREPTLTKLGTKTERKVIRTMGGNTKVILFTAETANVYDAS 69
Query: 237 ECSTRKTRIIDVVYNASNNEWVRTKTLVKNAIVVVD 344
E +K +II V N +N+ +V+ + K ++ +
Sbjct: 70 EKKIKKAKIITVKANPANSHYVQRNIINKGTVIATE 105
>UniRef50_Q0W1L5 Cluster: 30S ribosomal protein S8e; n=3;
Euryarchaeota|Rep: 30S ribosomal protein S8e -
Uncultured methanogenic archaeon RC-I
Length = 125
Score = 58.8 bits (136), Expect = 5e-08
Identities = 31/95 (32%), Positives = 47/95 (49%)
Frame = +3
Query: 60 RRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSE 239
R+ATGG+ R KRK+ELGR +G Q++ ++ G +K R L+ D N
Sbjct: 9 RKATGGRLRLNRSKRKFELGRDFTIPVIGAQKLKVLNVTGNGSKVRVLKSDVVNVTDPKT 68
Query: 240 CSTRKTRIIDVVYNASNNEWVRTKTLVKNAIVVVD 344
T+K ++ V N +N +VR L K V +
Sbjct: 69 GKTQKVKMTTVTENPANKNYVRRNFLTKGTFVTTE 103
>UniRef50_O58830 Cluster: 30S ribosomal protein S8e; n=6;
Archaea|Rep: 30S ribosomal protein S8e - Pyrococcus
horikoshii
Length = 127
Score = 58.4 bits (135), Expect = 6e-08
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Frame = +3
Query: 60 RRATGGKRAPIRKKRKYELGRPAANTKLGPQ-RIHLVRSRGGNTKYRALRLDTGNFAWGS 236
++ +GG+ RKKRK ELGR +NT++ Q + ++R+ GGN K R N +
Sbjct: 10 KKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNRKVRLTAAAYAN-VFDK 68
Query: 237 ECSTRKTRIIDVVYNASNNEWVRTKTLVKNAIV 335
RK RII V+ N +N ++ R + K AI+
Sbjct: 69 SGKGRKVRIIRVLENPANRQFARRNIITKGAII 101
>UniRef50_Q980W3 Cluster: 30S ribosomal protein S8e; n=4;
Archaea|Rep: 30S ribosomal protein S8e - Sulfolobus
solfataricus
Length = 133
Score = 55.2 bits (127), Expect = 6e-07
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Frame = +3
Query: 60 RRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLV-RSRGGNTKYRALRLDTGNFAWGS 236
R+ TGG + R KRKYE+G P T L + I + R+ GGN K R T N +
Sbjct: 10 RKITGGLKGKHRDKRKYEIGNPPTFTTLSAEDIRIKDRTLGGNFKVRLKYTTTANVLDPA 69
Query: 237 ECSTRKTRIIDVVYNASNNEWVRTKTLVKNAIVVVDA 347
+ +K +I++++ +N E R +++ A + +A
Sbjct: 70 TNTAKKVKILEILETPANKELARRGIIIRGAKIRTEA 106
>UniRef50_Q8TV55 Cluster: 30S ribosomal protein S8e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S8e -
Methanopyrus kandleri
Length = 133
Score = 54.8 bits (126), Expect = 8e-07
Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Frame = +3
Query: 51 WHKR---RATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALRLDT- 215
WH R + TGG+ P RKKRK+E+G P T +G +R + R GGN K + L+ T
Sbjct: 4 WHGRSLRKPTGGRIRPHRKKRKFEMGNPPTETLVGEERKLKERRGMGGNVK-KGLKFATH 62
Query: 216 GNFAWGSECSTRKTRIIDVVYNASNNEWVRTKTLVKNAIV 335
N A + RI +VV N ++ + R + K AI+
Sbjct: 63 ANVADPETGEVKCVRIEEVVKNPASQYYERHGVITKGAII 102
>UniRef50_P61300 Cluster: 30S ribosomal protein S8e; n=5;
Methanococcus|Rep: 30S ribosomal protein S8e -
Methanococcus maripaludis
Length = 128
Score = 53.2 bits (122), Expect = 2e-06
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Frame = +3
Query: 57 KRRATGGKRAPIRKKRKYELGRPAANTKLGPQ-RIHLVRSRGGNTKYRALRLDTGNFAWG 233
+R +TG K KK K E+GRPAA T++ + + +VR RG N K + + + N
Sbjct: 9 RRLSTGAKVWRAAKKHKREMGRPAAETQVSDKIKRKIVRCRGANLKVKLEKTNYANVFDQ 68
Query: 234 SECSTRKTRIIDVVYNASNNEWVRTKTLVKNAIV 335
+ +K + +V+ N +N ++R + K AI+
Sbjct: 69 ANKVCKKVVVTNVIDNKANKHYIRRNVMTKGAII 102
>UniRef50_A0RXG5 Cluster: Ribosomal protein S8E; n=2;
Thermoprotei|Rep: Ribosomal protein S8E - Cenarchaeum
symbiosum
Length = 129
Score = 52.0 bits (119), Expect = 5e-06
Identities = 28/91 (30%), Positives = 47/91 (51%)
Frame = +3
Query: 63 RATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSEC 242
+ TGG+R P+R +RKYE+ R G Q + RG TK +D N A
Sbjct: 12 KLTGGRRHPLRTRRKYEIDRYPNEALSGAQETVTRKVRGKRTKTALKTIDFVNLA-VQGA 70
Query: 243 STRKTRIIDVVYNASNNEWVRTKTLVKNAIV 335
+K++I+ V+ N +NN++ R + + A++
Sbjct: 71 KVKKSKIVKVLENPTNNDYRRRGVITRGAVL 101
>UniRef50_Q9YDY0 Cluster: 30S ribosomal protein S8e; n=3;
Desulfurococcales|Rep: 30S ribosomal protein S8e -
Aeropyrum pernix
Length = 136
Score = 50.4 bits (115), Expect = 2e-05
Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Frame = +3
Query: 30 MGISRDHWH-KRRATGGKRAPIRK-KRKYELGRPAANTKLG---PQRIHLVRSRGGNTKY 194
MGI + W K++ +GGKR K KRKY GRP T L + VR+RGG+ K
Sbjct: 1 MGIYQ--WRDKKKPSGGKRRYYYKVKRKYAAGRPPTYTTLSAAEEEERKPVRARGGSYKI 58
Query: 195 RALRLDTGNFAWGSECSTRKTRIIDVVYNASNNEWVRTKTLVKNAIV 335
+A ++ + RK RI+ +V ++ E+ R +VK A++
Sbjct: 59 KAKKVAFAVVSNPKTGEARKARILRIVETPAHREYARRGIIVKGAVI 105
>UniRef50_Q8ZTB8 Cluster: 30S ribosomal protein S8e; n=6;
Archaea|Rep: 30S ribosomal protein S8e - Pyrobaculum
aerophilum
Length = 131
Score = 49.2 bits (112), Expect = 4e-05
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Frame = +3
Query: 60 RRATGGKRAPIRKKRKYEL-GRPAANTKLGPQRIHLV-RSRGGNTKYRALRLDTGNFAWG 233
++ +GGK+ +RK +K L G P KLG +V R RGGN K R N
Sbjct: 13 KKPSGGKKRKVRKTKKKALGGGPPQIPKLGENDTRIVERVRGGNLKVRLREAKFANVYIP 72
Query: 234 SECSTRKTRIIDVVYNASNNEWVRTKTLVKNAIV 335
E + K +II ++ +N ++ R +VK +++
Sbjct: 73 KERKSVKAKIISIISTPANPDFARRNFIVKGSVI 106
>UniRef50_A1RX37 Cluster: Ribosomal protein S8e; n=1; Thermofilum
pendens Hrk 5|Rep: Ribosomal protein S8e - Thermofilum
pendens (strain Hrk 5)
Length = 128
Score = 40.7 bits (91), Expect = 0.014
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Frame = +3
Query: 60 RRATGG-KRAPIRKKRKYELGR-PAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWG 233
R+ TGG K ++ KRKY GR P + +V++RG K + N
Sbjct: 10 RKITGGIKGRHVKTKRKYLSGRYPILTVPGQATEVKVVKARGNTYKLKVKVASEVNVYIP 69
Query: 234 SECSTRKTRIIDVVYNASNNEWVRTKTLVKNAIV 335
E T + +II V+ N SN ++ R + K AI+
Sbjct: 70 KEGKTVRAQIIKVLDNPSNKDFARRGIISKGAIL 103
>UniRef50_Q4SV68 Cluster: Chromosome undetermined SCAF13783, whole
genome shotgun sequence; n=2; Coelomata|Rep: Chromosome
undetermined SCAF13783, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 149
Score = 37.5 bits (83), Expect = 0.13
Identities = 26/68 (38%), Positives = 31/68 (45%)
Frame = +1
Query: 211 ILETSHGDLNVQPARLVLLMLFIMRLTMNGCVPRPW*RMLLSWWMPRLSGSGMKATTCCH 390
+LETSHG LN P R M M TM+ PR W R + S L SGM+
Sbjct: 1 MLETSHGALNAAPERPGSSMWSTMPPTMSWLEPRHWSRTVSSLLTACLLDSGMRPIMPLL 60
Query: 391 SEGRQVPS 414
R+ PS
Sbjct: 61 LGARRAPS 68
>UniRef50_Q2GJW1 Cluster: Phage uncharacterized protein; n=1;
Anaplasma phagocytophilum HZ|Rep: Phage uncharacterized
protein - Anaplasma phagocytophilum (strain HZ)
Length = 445
Score = 35.1 bits (77), Expect = 0.67
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = -2
Query: 214 VSRRRARYLVLPPRDLTKWMRWGPSLVLAAGRPNSYFLFLRMGARLPPVAL---LLCQ*S 44
V R +A Y L R L W P ++L R + Y L M +LP +A C+ S
Sbjct: 314 VYRAKANYTELKKRVLHLSEHWKPDVILIEERSSGYQLLQEMSKKLPVIAFNPKKYCKLS 373
Query: 43 RLIPILALV 17
RL+ I+ +
Sbjct: 374 RLLQIIPTI 382
>UniRef50_Q5C1R4 Cluster: SJCHGC03085 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC03085 protein - Schistosoma
japonicum (Blood fluke)
Length = 120
Score = 35.1 bits (77), Expect = 0.67
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +3
Query: 321 KNAIVVVDATPFRQWYESHYLLPLG 395
K+AIV + PFRQW+E+ YL LG
Sbjct: 1 KSAIVQIGGAPFRQWFEAPYLKELG 25
>UniRef50_Q2W531 Cluster: TPR repeat; n=3; Magnetospirillum|Rep: TPR
repeat - Magnetospirillum magneticum (strain AMB-1 /
ATCC 700264)
Length = 556
Score = 34.7 bits (76), Expect = 0.89
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +3
Query: 66 ATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSR 176
A G +RAP K YE R AA T+L P + +R R
Sbjct: 268 ALGAERAPANLKANYEKERDAAGTRLSPAELEALRGR 304
>UniRef50_A0IYI1 Cluster: Putative uncharacterized protein; n=1;
Shewanella woodyi ATCC 51908|Rep: Putative
uncharacterized protein - Shewanella woodyi ATCC 51908
Length = 147
Score = 34.3 bits (75), Expect = 1.2
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 166 SDPVVVTLNIVPC-VLILETSHGDLNVQPARLVLLMLFIMRLTMNG 300
SD + V L+ +P V +L SH + QP +LLMLFIM + G
Sbjct: 48 SDVMFVNLDAMPKRVALLSRSHDNQYQQPLLFILLMLFIMHFQLQG 93
>UniRef50_UPI0000F2CAD6 Cluster: PREDICTED: hypothetical protein;
n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
protein - Monodelphis domestica
Length = 130
Score = 33.5 bits (73), Expect = 2.1
Identities = 27/73 (36%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Frame = +3
Query: 39 SRDHWHK--RRATGGKRAPIRKKRKYELG--RPAANTKLGPQRIHLVRSRGGNTKYRALR 206
SR H H R GG P+ G R A +LG R+ L R RGG + R R
Sbjct: 27 SRGHGHAPARPGGGGGGGPLHALAARVGGERRAARARRLG--RVGLPRGRGGGARARKER 84
Query: 207 LDTGNFAWGSECS 245
G A GS CS
Sbjct: 85 ARAGRLAGGSRCS 97
>UniRef50_UPI0000DD863F Cluster: PREDICTED: hypothetical protein;
n=1; Homo sapiens|Rep: PREDICTED: hypothetical protein -
Homo sapiens
Length = 251
Score = 33.5 bits (73), Expect = 2.1
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +3
Query: 15 GTRAKMGISRDHWHKRRATGGKRAPIRKKRKYELGRP 125
GTR + G SR WH RR G +R R R E G P
Sbjct: 100 GTRGRPGGSRRPWHGRRVIGARRGRDRGGRGEEEGMP 136
>UniRef50_Q9VL72 Cluster: CG5899-PA, isoform A; n=5; Diptera|Rep:
CG5899-PA, isoform A - Drosophila melanogaster (Fruit
fly)
Length = 844
Score = 33.1 bits (72), Expect = 2.7
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Frame = +3
Query: 234 SECSTRKT----RIIDVVYNASNNEWVRTKTLV-KNAIVVVDATPFRQWYESHYLLPLGR 398
SE ST+ T ++ + AS E KTL K A+ ++D PF W + L R
Sbjct: 174 SEMSTKMTGQRKKVFQFMNEASLIELQSVKTLSEKKALAIIDVRPFSDWSDLRQKLESIR 233
Query: 399 KTGAKLTEAEEAI 437
+G L A+E I
Sbjct: 234 MSGDLLNYAQELI 246
>UniRef50_UPI0000585237 Cluster: PREDICTED: similar to
cardioacceleratory peptide receptor; n=1;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
cardioacceleratory peptide receptor - Strongylocentrotus
purpuratus
Length = 416
Score = 32.7 bits (71), Expect = 3.6
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 18 TRAKMGISRDHWHKRRATGGKRAP-IRKKRKYELGRPAANTKL 143
T A + IS+ W K T GKR+ KK K EL R A++T L
Sbjct: 223 TVAYLRISKKIWDKAHETSGKRSKRASKKNKIELNRNASSTTL 265
>UniRef50_Q7XEZ3 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 192
Score = 32.7 bits (71), Expect = 3.6
Identities = 25/55 (45%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +3
Query: 66 ATGGKRAPIRKKRKYELGR-PAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFA 227
A GGKR KK+ GR PA NT L P ++HL+ RGGN R L + G+ A
Sbjct: 28 ADGGKR----KKQSSCGGRIPALNT-LTPLKLHLLLERGGNGGQRLLGVRRGDGA 77
>UniRef50_Q473M5 Cluster: Putative uncharacterized protein; n=3;
Cupriavidus|Rep: Putative uncharacterized protein -
Ralstonia eutropha (strain JMP134) (Alcaligenes
eutrophus)
Length = 1419
Score = 31.9 bits (69), Expect = 6.3
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 285 THYKQHQ*YESCG-LNIQIPMRSFQYQDAGHD 193
TH+ H YE G +++P+R +YQ A HD
Sbjct: 657 THFPFHGPYEKAGDFRVEVPIRQVRYQIAAHD 688
>UniRef50_A0P207 Cluster: Putative uncharacterized protein; n=1;
Stappia aggregata IAM 12614|Rep: Putative
uncharacterized protein - Stappia aggregata IAM 12614
Length = 636
Score = 31.5 bits (68), Expect = 8.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 184 LPPRDLTKWMRWGPSLVLAAGRPNSYFLFL 95
LPP D ++ WGPS L+ G+ +Y FL
Sbjct: 328 LPPVDPGEYSTWGPSFPLSEGKDQAYIGFL 357
>UniRef50_A5E7M6 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 620
Score = 31.5 bits (68), Expect = 8.3
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 345 ATPFRQWYESHYLLPLGRKTGAKLTEAE 428
ATPF Q + +HY+ L RK G K+ E E
Sbjct: 374 ATPFYQTFLAHYIWQLKRKKGKKMKEDE 401
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 504,322,041
Number of Sequences: 1657284
Number of extensions: 10822939
Number of successful extensions: 26123
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 25519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26112
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 22340008747
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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