Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_F22
(440 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 187 4e-48
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 187 4e-48
11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861 30 0.95
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352... 30 0.95
09_03_0103 - 12383585-12384700 29 1.3
04_03_0182 - 12349072-12349149,12349459-12349656,12349746-123497... 29 1.3
02_04_0064 - 19375497-19375580,19375659-19375733,19376359-193765... 29 2.2
06_01_0913 - 7042230-7043332,7043420-7043621 28 3.8
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086... 27 6.7
05_05_0137 - 22641577-22642119 27 6.7
05_03_0211 + 10236867-10237075,10238036-10238270,10238433-102386... 27 6.7
04_04_1534 + 34200538-34200589,34200677-34200857,34201701-342018... 27 6.7
01_05_0607 + 23619271-23619426,23619479-23619552,23619917-236205... 27 6.7
01_01_1134 + 8994315-8995892 27 6.7
03_01_0607 + 4464669-4465367,4466212-4467369,4468005-4469114,446... 27 8.8
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 187 bits (455), Expect = 4e-48
Identities = 91/136 (66%), Positives = 106/136 (77%), Gaps = 1/136 (0%)
Frame = +3
Query: 30 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALR 206
MGISRD HKRRATGGK+ RKKRKYELGR ANTKL + + VR RGGN K+RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALR 60
Query: 207 LDTGNFAWGSECSTRKTRIIDVVYNASNNEWVRTKTLVKNAIVVVDATPFRQWYESHYLL 386
LDTGN++WGSE TRKTRI+DVVYNASNNE VRT+TLVK+AIV VDA PF+QWY +HY +
Sbjct: 61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120
Query: 387 PLGRKTGAKLTEAEEA 434
+GRK A + + A
Sbjct: 121 DIGRKKKAPAAKKDAA 136
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 187 bits (455), Expect = 4e-48
Identities = 93/139 (66%), Positives = 108/139 (77%), Gaps = 3/139 (2%)
Frame = +3
Query: 30 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALR 206
MGISRD HKRRATGGK+ RKKRKYELGR ANTKL + + VR RGGN K+RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60
Query: 207 LDTGNFAWGSECSTRKTRIIDVVYNASNNEWVRTKTLVKNAIVVVDATPFRQWYESHYLL 386
LDTGN++WGSE TRKTRI+DVVYNASNNE VRT+TLVK+AIV VDA PF+QWY +HY +
Sbjct: 61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120
Query: 387 PLGRKTGAKLT--EAEEAI 437
+GRK A +AE A+
Sbjct: 121 DIGRKKKAPAAKKDAEHAL 139
>11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861
Length = 158
Score = 29.9 bits (64), Expect = 0.95
Identities = 20/59 (33%), Positives = 27/59 (45%)
Frame = +3
Query: 15 GTRAKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTK 191
G A+ G + KRR GG+RA R+K + E GR A + R RGG +
Sbjct: 34 GEEARRGAGK---RKRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 89
Score = 29.9 bits (64), Expect = 0.95
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +3
Query: 15 GTRAKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRI-HLVRSRGGNTK 191
G A+ G + KRR GG+RA R+K + E GR A + + R RGG +
Sbjct: 70 GEEARRGAGK---RKRRRGGGRRAAGRRKEEEEAGRRKAGEETRRRGAGRRKRRRGGRRR 126
Query: 192 YRALR 206
R R
Sbjct: 127 RRRRR 131
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 57 KRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTK 191
+RR GG+RA R+K + E GR A + R RGG +
Sbjct: 9 RRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 53
>07_01_0467 -
3524598-3524837,3524939-3525466,3526242-3526892,
3527015-3527500,3527580-3527792,3527885-3528174,
3528276-3528418,3528633-3528855,3528983-3529160,
3529598-3529867
Length = 1073
Score = 29.9 bits (64), Expect = 0.95
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Frame = +3
Query: 102 RKYELGRPAANTKLGPQRIHLVRSR----GGNTKYRALRLDTGN-FAWGS 236
R+ +LG P+ +T+ P+R+ +++R K+ A DTG F WGS
Sbjct: 271 REGQLGYPSVDTQPTPRRVSSLKARIISVAAANKHSAAVADTGEVFTWGS 320
>09_03_0103 - 12383585-12384700
Length = 371
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -1
Query: 440 YDGFLSLSELGTCLPSEWQQVVAFIPLPERRGIHHDNSILY 318
+D F E+ T W+Q+ +F P RG+H + ++ Y
Sbjct: 173 FDSFNVCCEIFTIGDKSWRQIGSFHGAPTDRGVHVNGAVYY 213
>04_03_0182 -
12349072-12349149,12349459-12349656,12349746-12349750,
12349928-12350041,12350129-12350240,12350363-12350377
Length = 173
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -2
Query: 253 LRVEHSDPHAKFPVSRRRARYLVLPPRDLTKWMRWGPSLV 134
LRV H H + +R R + + P ++ K RWG ++
Sbjct: 16 LRVMHFSGHGDWTTNRDRPTFTLYPLQECYKLWRWGTQMI 55
>02_04_0064 -
19375497-19375580,19375659-19375733,19376359-19376514,
19377016-19377093,19377328-19377428,19377570-19377717,
19378172-19378316,19378803-19378906,19380257-19380385,
19380526-19380636,19380734-19380863,19381915-19382034,
19382360-19382481,19382965-19383048,19383241-19383357,
19383442-19383522,19384138-19384197,19384398-19384440,
19384528-19384626,19385353-19385564,19385964-19386091,
19386246-19386396
Length = 825
Score = 28.7 bits (61), Expect = 2.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 132 WQPGDLTHTSSSYEWAHVCRP*PSSYANDHD 40
W+ GD+ HT ++ W+ C +YA HD
Sbjct: 570 WKMGDIVHTLTNRRWSEKC----VTYAESHD 596
>06_01_0913 - 7042230-7043332,7043420-7043621
Length = 434
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 217 PVSRRRARYLVLPPRDLTKWMRWGPSLVLAAGRPNSY 107
P +R+ R+ P +T + W P L +AAGRP ++
Sbjct: 180 PGTRKFWRW-AFPTHGVTVSVYWAPFLAMAAGRPENF 215
>06_03_1515 -
30707600-30707613,30708093-30708167,30708596-30708647,
30708751-30708831,30709145-30709219,30709870-30709977,
30710026-30710032,30710133-30710268,30710361-30710685
Length = 290
Score = 27.1 bits (57), Expect = 6.7
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -2
Query: 232 PHAKFPVSRRRARYLVLPPRDLTKWMRWGP 143
P +RRR R+ + PPR +RW P
Sbjct: 18 PSPAVAATRRRLRFPLAPPRPRPPPLRWSP 47
>05_05_0137 - 22641577-22642119
Length = 180
Score = 27.1 bits (57), Expect = 6.7
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Frame = -2
Query: 232 PHAKFPVSRR-------RARYLVLPPRDLTKWMRWGPSLVLAAGRPNSYFLFLRMGARLP 74
PHA +S R R R +PP LT G L + P S LFLR GAR
Sbjct: 27 PHAALAISHRGKSCVRARGRRGRIPPAPLTA----GHESCLVSAVPLSGTLFLRSGAREL 82
Query: 73 PVA 65
P+A
Sbjct: 83 PLA 85
>05_03_0211 +
10236867-10237075,10238036-10238270,10238433-10238602,
10240324-10240466,10240590-10240767,10241441-10242008,
10243001-10243113,10244521-10244764,10245201-10245278,
10246500-10246727
Length = 721
Score = 27.1 bits (57), Expect = 6.7
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Frame = +1
Query: 205 VLILETSHGDLNVQPARLVLLMLFIMRLTMNGCVPR-----PW*RMLLSWW 342
+L L L + P RL++LM+F+ T N PR W R L WW
Sbjct: 652 ILALVVMALSLAIVPTRLLVLMMFLEVFT-NHSPPRRASTERWTRRLREWW 701
>04_04_1534 +
34200538-34200589,34200677-34200857,34201701-34201842,
34201963-34202032,34202169-34202302
Length = 192
Score = 27.1 bits (57), Expect = 6.7
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = -2
Query: 172 DLTKWMRWGPSLVLAAGRPNSYFLFLRMGARLPPV---ALLL 56
DL W R S AG +FLF R G P V ALLL
Sbjct: 20 DLVLWRRRNVSAAAVAGATAVWFLFERAGYSFPSVMANALLL 61
>01_05_0607 +
23619271-23619426,23619479-23619552,23619917-23620594,
23620711-23620815,23620877-23621003,23621613-23621773,
23621858-23622028,23622195-23622324,23622532-23622747,
23626821-23627348
Length = 781
Score = 27.1 bits (57), Expect = 6.7
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 9 EFGTRAKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAAN 134
EFG + + D W +RR + G+R P + GR A+
Sbjct: 640 EFGLSTAVSRAGDWWRRRRDSPGQRVPQPADEVRDSGRRTAH 681
>01_01_1134 + 8994315-8995892
Length = 525
Score = 27.1 bits (57), Expect = 6.7
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 216 GNFAWGSECSTRKTRIIDVVYNASNNEWVRTKTLVKNAIVVVDATPFR 359
G F+ C+ RK +DV + RT +N+ VV D+T F+
Sbjct: 146 GLFSRDCPCAGRKAVTVDVASEPRSPATPRTHARFENSHVVADSTIFK 193
>03_01_0607 +
4464669-4465367,4466212-4467369,4468005-4469114,
4469273-4469314,4469496-4469572,4469671-4469755,
4469818-4469901,4469988-4470089,4470181-4470279,
4470794-4470919
Length = 1193
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 82 RLPPVALLLCQ*SRLIPILALVPNS 8
R+PP A + RL+ IL+L+PNS
Sbjct: 773 RVPPAAHIRRHAGRLVTILSLLPNS 797
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,415,861
Number of Sequences: 37544
Number of extensions: 329556
Number of successful extensions: 825
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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