Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_F22
(440 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 248 9e-66
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 248 9e-66
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 248 9e-66
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 248 9e-66
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 188 6e-48
AF521131-1|AAM80488.1| 354|Homo sapiens platelet receptor for t... 30 3.1
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 248 bits (606), Expect = 9e-66
Identities = 112/137 (81%), Positives = 121/137 (88%)
Frame = +3
Query: 30 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 209
MGISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 210 DTGNFAWGSECSTRKTRIIDVVYNASNNEWVRTKTLVKNAIVVVDATPFRQWYESHYLLP 389
D GNF+WGSEC TRKTRIIDVVYNASNNE VRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 390 LGRKTGAKLTEAEEAII 440
LGRK GAKLT EE I+
Sbjct: 121 LGRKKGAKLTPEEEEIL 137
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 248 bits (606), Expect = 9e-66
Identities = 112/137 (81%), Positives = 121/137 (88%)
Frame = +3
Query: 30 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 209
MGISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 210 DTGNFAWGSECSTRKTRIIDVVYNASNNEWVRTKTLVKNAIVVVDATPFRQWYESHYLLP 389
D GNF+WGSEC TRKTRIIDVVYNASNNE VRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 390 LGRKTGAKLTEAEEAII 440
LGRK GAKLT EE I+
Sbjct: 121 LGRKKGAKLTPEEEEIL 137
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 248 bits (606), Expect = 9e-66
Identities = 112/137 (81%), Positives = 121/137 (88%)
Frame = +3
Query: 30 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 209
MGISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 210 DTGNFAWGSECSTRKTRIIDVVYNASNNEWVRTKTLVKNAIVVVDATPFRQWYESHYLLP 389
D GNF+WGSEC TRKTRIIDVVYNASNNE VRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 390 LGRKTGAKLTEAEEAII 440
LGRK GAKLT EE I+
Sbjct: 121 LGRKKGAKLTPEEEEIL 137
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 248 bits (606), Expect = 9e-66
Identities = 112/137 (81%), Positives = 121/137 (88%)
Frame = +3
Query: 30 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 209
MGISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 210 DTGNFAWGSECSTRKTRIIDVVYNASNNEWVRTKTLVKNAIVVVDATPFRQWYESHYLLP 389
D GNF+WGSEC TRKTRIIDVVYNASNNE VRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 390 LGRKTGAKLTEAEEAII 440
LGRK GAKLT EE I+
Sbjct: 121 LGRKKGAKLTPEEEEIL 137
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 188 bits (459), Expect = 6e-48
Identities = 96/137 (70%), Positives = 104/137 (75%)
Frame = +3
Query: 30 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 209
MGISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGG
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG--------- 51
Query: 210 DTGNFAWGSECSTRKTRIIDVVYNASNNEWVRTKTLVKNAIVVVDATPFRQWYESHYLLP 389
C TRKTRIIDVVYNASNNE VRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 52 ----------C-TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 100
Query: 390 LGRKTGAKLTEAEEAII 440
LGRK GAKLT EE I+
Sbjct: 101 LGRKKGAKLTPEEEEIL 117
>AF521131-1|AAM80488.1| 354|Homo sapiens platelet receptor for type
III collagen protein.
Length = 354
Score = 30.3 bits (65), Expect = 3.1
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 21 RAKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRI-HLVRSRGGNTK 191
R + +SRDH H A R ++KK+K EL T + RI ++ SR N K
Sbjct: 41 RCRFAVSRDHCHCTLAWKTARLHLKKKKKKELNL-VYTTVMNTNRIFKMIFSRVANVK 97
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,438,003
Number of Sequences: 237096
Number of extensions: 1794050
Number of successful extensions: 6966
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6966
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3602345922
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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