Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_F22
(440 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 209 8e-55
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 30 0.65
U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha ... 30 0.65
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 30 0.65
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 30 0.65
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 30 0.65
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 30 0.65
AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alph... 30 0.65
AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alph... 30 0.65
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 30 0.65
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p... 27 4.6
AL132948-21|CAC51051.2| 453|Caenorhabditis elegans Hypothetical... 27 4.6
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical... 27 4.6
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 209 bits (510), Expect = 8e-55
Identities = 95/137 (69%), Positives = 111/137 (81%)
Frame = +3
Query: 30 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 209
MGISRD WHKR TG + KKRK+ELGRPAANTK+G R+ LVR+RGGN KYRALRL
Sbjct: 1 MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRL 60
Query: 210 DTGNFAWGSECSTRKTRIIDVVYNASNNEWVRTKTLVKNAIVVVDATPFRQWYESHYLLP 389
D+GNF+W SE +TRKTRI+D +YNA+NNE VRTKTLVK AI+ VDA PFRQWYE+HY LP
Sbjct: 61 DSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALP 120
Query: 390 LGRKTGAKLTEAEEAII 440
L RK AKL+E + AI+
Sbjct: 121 LARKKNAKLSEEDNAIL 137
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 30.3 bits (65), Expect = 0.65
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 198 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNEWV 302
A+++D G+FAWGS+ RK + D+ +N + V
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha
family protein 3 protein.
Length = 514
Score = 30.3 bits (65), Expect = 0.65
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 151 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPIL 26
W S V +GRPN +++G P A+L C S++I ++
Sbjct: 383 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVV 424
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 30.3 bits (65), Expect = 0.65
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 198 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNEWV 302
A+++D G+FAWGS+ RK + D+ +N + V
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 30.3 bits (65), Expect = 0.65
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 198 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNEWV 302
A+++D G+FAWGS+ RK + D+ +N + V
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 30.3 bits (65), Expect = 0.65
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 198 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNEWV 302
A+++D G+FAWGS+ RK + D+ +N + V
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 30.3 bits (65), Expect = 0.65
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 198 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNEWV 302
A+++D G+FAWGS+ RK + D+ +N + V
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alpha 3
protein.
Length = 514
Score = 30.3 bits (65), Expect = 0.65
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 151 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPIL 26
W S V +GRPN +++G P A+L C S++I ++
Sbjct: 383 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVV 424
>AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alpha-3
subunit protein.
Length = 423
Score = 30.3 bits (65), Expect = 0.65
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 151 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPIL 26
W S V +GRPN +++G P A+L C S++I ++
Sbjct: 292 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVV 333
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 30.3 bits (65), Expect = 0.65
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 198 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNEWV 302
A+++D G+FAWGS+ RK + D+ +N + V
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 401 LPSEWQQVVAFIPLPERRGIHHDNSI 324
LP E + + IPLP+RRG D++I
Sbjct: 1345 LPDEEDEEMEVIPLPKRRGAAPDSTI 1370
>AL132948-21|CAC51051.2| 453|Caenorhabditis elegans Hypothetical
protein Y39B6A.29 protein.
Length = 453
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1
Query: 413 LGTCLPSEWQQVVAFIPLPERRGIHHDNSILYQGLGT 303
+G C + + V+ + +P+RR S LYQ LG+
Sbjct: 372 IGDCCLNSCRSVICALAMPDRRAQAFSISKLYQALGS 408
>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 401 LPSEWQQVVAFIPLPERRGIHHDNSI 324
LP E + + IPLP+RRG D++I
Sbjct: 1345 LPDEEDEEMEVIPLPKRRGAAPDSTI 1370
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,121,826
Number of Sequences: 27780
Number of extensions: 238949
Number of successful extensions: 574
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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