Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_F22
         (440 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...   268   2e-74
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.0  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   3.4  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    21   6.0  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score =  268 bits (657), Expect = 2e-74
 Identities = 121/137 (88%), Positives = 129/137 (94%)
 Frame = +3

Query: 30  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 209
           MGISRDHWHKRRATGGKR PIRKKRK+ELGRPAANTKLGPQRIH VR+RGGN KYRALRL
Sbjct: 1   MGISRDHWHKRRATGGKRKPIRKKRKFELGRPAANTKLGPQRIHTVRTRGGNKKYRALRL 60

Query: 210 DTGNFAWGSECSTRKTRIIDVVYNASNNEWVRTKTLVKNAIVVVDATPFRQWYESHYLLP 389
           DTGNF+WGSEC+TRKTRIIDVVYNASNNE VRTKTLVKNAIV +DATPFRQWYE HY+LP
Sbjct: 61  DTGNFSWGSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPFRQWYEGHYVLP 120

Query: 390 LGRKTGAKLTEAEEAII 440
           LGRK GAKLTEAEE ++
Sbjct: 121 LGRKRGAKLTEAEEEVL 137


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 313 PW*RMLLSWWMPRL 354
           PW R +   WMPRL
Sbjct: 348 PWVRQVFLNWMPRL 361


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 261 YESCGLNIQIPMRSFQYQD 205
           YE CGL  + PM SFQ  D
Sbjct: 653 YE-CGLRFEDPMISFQPGD 670


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 9   EFGTRAKMGISRDHWHKRRATGGKRAP 89
           EFG   K G  +     +R  GG+ +P
Sbjct: 93  EFGKEYKNGFIKGQSEVQRGPGGRLSP 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,534
Number of Sequences: 438
Number of extensions: 2811
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)