Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_F21
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    29   0.20 
SPBC26H8.05c |||serine/threonine protein phosphatase |Schizosacc...    29   0.35 
SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch...    27   1.4  
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    25   3.3  
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch...    25   3.3  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   5.7  
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    24   7.6  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    24   7.6  
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    24   10.0 

>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 29.5 bits (63), Expect = 0.20
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +1

Query: 103 NIKRWYEAVRSTAPGYQEANEKGLEAFKSLVNSMI 207
           ++ + YE++RS    Y+ ANEK  EA  S+V+S +
Sbjct: 739 SVHKNYESLRSQLLEYKAANEKHTEAILSVVSSTL 773


>SPBC26H8.05c |||serine/threonine protein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 28.7 bits (61), Expect = 0.35
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -1

Query: 234 CEHSLQLFLNHAVDEGFESFEAFLIGFLVTWRC 136
           C  +  LFL   VD GF S E FL+  L+T +C
Sbjct: 71  CPGTKYLFLGDFVDRGFYSVETFLL--LLTLKC 101


>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
           Usp106|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = -2

Query: 284 AYIARVKTKKIRRNNFAVNIHYNYFLIMLLTRDLKA 177
           AY++R+   +   ++F+  +H  Y ++  + RDL+A
Sbjct: 195 AYLSRLDNDRRLADHFSGKMHLGYAMLRNIARDLRA 230


>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 98  TLTLKGGMKQSEAQRQVTRKPMRKAS 175
           +L LKGG +   A+ Q T+KP++  S
Sbjct: 542 SLFLKGGKRFFSAEAQKTQKPLKAVS 567


>SPBC56F2.12 |ilv5||acetohydroxyacid
           reductoisomerase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = +1

Query: 97  YPNIKRWYEAVRS----TAPGYQEANEKGLEAFKSL 192
           Y N++   EA RS    +AP Y+E  +K LE  ++L
Sbjct: 350 YDNVENGNEAKRSLEYNSAPNYRELYDKELEEIRNL 385


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 216 LFLNHAVDEGFESFEAFLIGFLVTWRCASDCFI 118
           LFL   VD G +S E  L+ FL   R   + F+
Sbjct: 272 LFLGDYVDRGKQSLETILLLFLYKIRYPENFFL 304


>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +1

Query: 91  KKYPNIKRWYEAVRSTAPGYQEANEK 168
           K Y NIKRW   V S  P  + A EK
Sbjct: 188 KPYKNIKRWMRVV-SDRPACRIAAEK 212


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 167 KASKLSNPSSTA*LRNNCNECSQQNYYVLFSLFL 268
           K+ +LSN   T   R +   C Q++  +L+S FL
Sbjct: 79  KSLRLSNRKGTIRWRYHSVPCVQRSMIILYSCFL 112


>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 85  DFKKYPNIKRWYEAV 129
           D  KYPN  RWY+ +
Sbjct: 46  DTAKYPNGARWYKQI 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,413,255
Number of Sequences: 5004
Number of extensions: 26069
Number of successful extensions: 81
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)