Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_F21
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0775 + 19462030-19462500,19462674-19462883                       27   4.1  
11_03_0075 + 9649588-9649834,9649906-9649927,9651360-9651483,965...    27   7.2  
08_01_0853 + 8399646-8399892,8399960-8399981,8401811-8401934,840...    27   7.2  
11_01_0484 - 3720376-3720671,3721209-3721767,3722209-3722640,372...    26   9.5  
09_02_0241 + 6179869-6180116,6180406-6180436,6182038-6182190,618...    26   9.5  

>04_03_0775 + 19462030-19462500,19462674-19462883
          Length = 226

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 339 FFQKAQA*CTNLTFATYRGLHCPCKNKE 256
           F+   +A C+ +  A  RG  CPCK +E
Sbjct: 152 FYILHKARCSEIREAHQRGFSCPCKGEE 179


>11_03_0075 +
           9649588-9649834,9649906-9649927,9651360-9651483,
           9651827-9651917,9652047-9652160,9652288-9652388,
           9652857-9652997
          Length = 279

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 206 LRNNCNECSQQNYYVLFSLFLHGQ 277
           LR+N ++  +  YYV+   F HGQ
Sbjct: 89  LRDNADKVGEAGYYVVVPDFFHGQ 112


>08_01_0853 +
           8399646-8399892,8399960-8399981,8401811-8401934,
           8402278-8402368,8402501-8402614,8402743-8402843,
           8403339-8403479
          Length = 279

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 206 LRNNCNECSQQNYYVLFSLFLHGQ 277
           LR+N ++  +  YYV+   F HGQ
Sbjct: 89  LRDNADKVGEAGYYVVVPDFFHGQ 112


>11_01_0484 -
           3720376-3720671,3721209-3721767,3722209-3722640,
           3723126-3723485
          Length = 548

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 234 CEHSLQLFLNHAVDEGFESFEAFL 163
           C++ ++L LN  + EGF++F   L
Sbjct: 229 CQNCMRLILNLCLSEGFDTFPTLL 252


>09_02_0241 +
           6179869-6180116,6180406-6180436,6182038-6182190,
           6182921-6182983,6183396-6183664,6184055-6184133,
           6184213-6184263
          Length = 297

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 234 CEHSLQLFLNHAVDEGFESFEAFLI 160
           C  +  LFL   VD GF S E FL+
Sbjct: 115 CPKTNYLFLGDFVDRGFYSVETFLL 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,767,208
Number of Sequences: 37544
Number of extensions: 153994
Number of successful extensions: 420
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)