Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_F21
         (399 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S75768-1|AAD14188.1|  595|Homo sapiens CD30 antigen protein.           29   5.7  
M83554-1|AAA51947.1|  595|Homo sapiens CD30 antigen protein.           29   5.7  
AY498860-1|AAR32099.1|  595|Homo sapiens tumor necrosis factor r...    29   5.7  
AL357835-1|CAH73719.1|  595|Homo sapiens tumor necrosis factor r...    29   5.7  
AJ289159-1|CAC16652.1|  595|Homo sapiens cytokine receptor CD30 ...    29   5.7  

>S75768-1|AAD14188.1|  595|Homo sapiens CD30 antigen protein.
          Length = 595

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 53  QACPASKRPISTSKNTLTLKGGMK-QSEAQRQVTRKPMRKASKLSNPSS 196
           QA P    P ++S +T+ ++GG +   EA  ++TR P    S +  PSS
Sbjct: 176 QAKPTPVSPATSSASTMPVRGGTRLAQEAASKLTRAP-DSPSSVGRPSS 223


>M83554-1|AAA51947.1|  595|Homo sapiens CD30 antigen protein.
          Length = 595

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 53  QACPASKRPISTSKNTLTLKGGMK-QSEAQRQVTRKPMRKASKLSNPSS 196
           QA P    P ++S +T+ ++GG +   EA  ++TR P    S +  PSS
Sbjct: 176 QAKPTPVSPATSSASTMPVRGGTRLAQEAASKLTRAP-DSPSSVGRPSS 223


>AY498860-1|AAR32099.1|  595|Homo sapiens tumor necrosis factor
           receptor superfamily, member 8 protein.
          Length = 595

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 53  QACPASKRPISTSKNTLTLKGGMK-QSEAQRQVTRKPMRKASKLSNPSS 196
           QA P    P ++S +T+ ++GG +   EA  ++TR P    S +  PSS
Sbjct: 176 QAKPTPVSPATSSASTMPVRGGTRLAQEAASKLTRAP-DSPSSVGRPSS 223


>AL357835-1|CAH73719.1|  595|Homo sapiens tumor necrosis factor
           receptor superfamily, member 8 protein.
          Length = 595

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 53  QACPASKRPISTSKNTLTLKGGMK-QSEAQRQVTRKPMRKASKLSNPSS 196
           QA P    P ++S +T+ ++GG +   EA  ++TR P    S +  PSS
Sbjct: 176 QAKPTPVSPATSSASTMPVRGGTRLAQEAASKLTRAP-DSPSSVGRPSS 223


>AJ289159-1|CAC16652.1|  595|Homo sapiens cytokine receptor CD30
           protein.
          Length = 595

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 53  QACPASKRPISTSKNTLTLKGGMK-QSEAQRQVTRKPMRKASKLSNPSS 196
           QA P    P ++S +T+ ++GG +   EA  ++TR P    S +  PSS
Sbjct: 176 QAKPTPVSPATSSASTMPVRGGTRLAQEAASKLTRAP-DSPSSVGRPSS 223


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,663,578
Number of Sequences: 237096
Number of extensions: 913164
Number of successful extensions: 1990
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1990
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2870859500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)