Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_F21
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-1|CAA83608.1|  761|Caenorhabditis elegans Hypothetical pr...    28   2.8  
AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical ...    28   2.8  
AC024843-12|AAF60833.3|  986|Caenorhabditis elegans Hypothetical...    28   2.8  
Z50071-7|CAA90405.3|  356|Caenorhabditis elegans Hypothetical pr...    27   3.7  
Z50071-6|CAL64000.2|  372|Caenorhabditis elegans Hypothetical pr...    27   3.7  
Z50071-5|CAH04718.2|  396|Caenorhabditis elegans Hypothetical pr...    27   3.7  
AF022980-11|AAG24189.1|  330|Caenorhabditis elegans Serpentine r...    27   5.0  
Z70309-10|CAA94361.2|  324|Caenorhabditis elegans Hypothetical p...    27   6.5  
AC006665-2|AAF39904.1|  341|Caenorhabditis elegans Hypothetical ...    26   8.7  

>Z32681-1|CAA83608.1|  761|Caenorhabditis elegans Hypothetical
           protein F56F3.1 protein.
          Length = 761

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +2

Query: 83  STSKNTLTLKGGMKQSEAQRQVTRKPMRKASKLSNPSSTA*LRNNCNECSQQ 238
           ++S     +KGGM+  + ++ +  K   K S L +PS  A L  +  + ++Q
Sbjct: 367 ASSSGAGDIKGGMRLEDLEKGMESKEPSKVSPLQDPSQQAQLLQHLQKFAKQ 418


>AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical
           protein H05C05.1a protein.
          Length = 820

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 11/45 (24%), Positives = 29/45 (64%)
 Frame = +2

Query: 68  SKRPISTSKNTLTLKGGMKQSEAQRQVTRKPMRKASKLSNPSSTA 202
           +++P  +S  + T K    ++++++  T+KP+  ++  S+PSS++
Sbjct: 689 AEKPEGSSSGSATEKSKEIEAKSKKDDTKKPLEPSAASSDPSSSS 733


>AC024843-12|AAF60833.3|  986|Caenorhabditis elegans Hypothetical
            protein Y61A9LA.10 protein.
          Length = 986

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 76   SDIDFKKYPNIKRWYEAVRSTAPGYQEA-NEKGLEAFKSLVNSMIKK 213
            +D+D KK  NIK  Y+  ++      EA  EK +++ K  ++ ++ K
Sbjct: 923  NDVDLKKQENIKEGYKKRKAEEMAESEAKREKSIKSRKKDISRVLSK 969


>Z50071-7|CAA90405.3|  356|Caenorhabditis elegans Hypothetical
           protein T07D4.2a protein.
          Length = 356

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 218 CNE-CSQQNYYVLFSLFLHGQCKPRYVANVKLVH 316
           CNE    +N  V+F + +H   K  Y+ NVK +H
Sbjct: 316 CNENLDLKNEPVIFDIPVHPHTKQFYIQNVKKIH 349


>Z50071-6|CAL64000.2|  372|Caenorhabditis elegans Hypothetical
           protein T07D4.2c protein.
          Length = 372

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 218 CNE-CSQQNYYVLFSLFLHGQCKPRYVANVKLVH 316
           CNE    +N  V+F + +H   K  Y+ NVK +H
Sbjct: 332 CNENLDLKNEPVIFDIPVHPHTKQFYIQNVKKIH 365


>Z50071-5|CAH04718.2|  396|Caenorhabditis elegans Hypothetical
           protein T07D4.2b protein.
          Length = 396

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 218 CNE-CSQQNYYVLFSLFLHGQCKPRYVANVKLVH 316
           CNE    +N  V+F + +H   K  Y+ NVK +H
Sbjct: 356 CNENLDLKNEPVIFDIPVHPHTKQFYIQNVKKIH 389


>AF022980-11|AAG24189.1|  330|Caenorhabditis elegans Serpentine
           receptor, class j protein49 protein.
          Length = 330

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +3

Query: 252 YFLCFYTGNVSPGTWQMSN*YIKPALSEKKNHSHYLCLLIHESSFKNLI 398
           YFLC+++G  +  T Q    Y +         S  L  L +E+S +  I
Sbjct: 146 YFLCWFSGEANLETRQYIRDYFQSTFGSDSMDSSMLTALYNEASLETKI 194


>Z70309-10|CAA94361.2|  324|Caenorhabditis elegans Hypothetical
           protein R102.7 protein.
          Length = 324

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = +2

Query: 71  KRPISTSKNTLTLKGGMKQSEAQRQVTRKPMRKASK 178
           K+P +T ++TL+++  ++    Q++V +KP  +  K
Sbjct: 267 KKPSTTREHTLSVQKTVEDDMTQKKVVKKPSSRPHK 302


>AC006665-2|AAF39904.1|  341|Caenorhabditis elegans Hypothetical
           protein H27M09.5 protein.
          Length = 341

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 80  ISTSKNTLTLKGGMKQSEAQRQVTRKPMRKASKLSN 187
           IST K   T+K     S+   + TR P++  SK SN
Sbjct: 278 ISTKKLISTIKPPKTLSKKSAKSTRNPLKSPSKRSN 313


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,758,001
Number of Sequences: 27780
Number of extensions: 144292
Number of successful extensions: 443
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)