Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_F19
(367 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ... 126 8e-31
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 30 0.13
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 25 2.8
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 25 2.8
SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p... 25 3.7
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 25 4.9
SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce... 24 6.4
SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces... 24 8.5
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 24 8.5
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc... 24 8.5
>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 126 bits (305), Expect = 8e-31
Identities = 53/96 (55%), Positives = 69/96 (71%)
Frame = -3
Query: 359 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTL 180
+G PHTVP KV+GKCGSVTVRL+PAPRG G+V+APV K+ LQ+AG++DCYT +RGST TL
Sbjct: 147 LGDPHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGSTKTL 206
Query: 179 GNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSDF 72
GNF LTP+LW + P ++P ++
Sbjct: 207 GNFVKAAFAAASLTYGILTPNLWAERPFGQTPIEEY 242
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 29.9 bits (64), Expect = 0.13
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = +3
Query: 102 DISPQVRCQICVSLGNGC---ICSFRKVAKS 185
D Q+ C++CV + NGC IC F V+ S
Sbjct: 68 DDQKQIFCKLCVDICNGCSTPICEFNAVSNS 98
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 2.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 253 TGADTIPVPRGAGINLTVTE 312
TG I +P+G G+ L++TE
Sbjct: 231 TGKSWISLPKGKGVKLSITE 250
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 2.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 253 TGADTIPVPRGAGINLTVTE 312
TG I +P+G G+ L++TE
Sbjct: 231 TGKSWISLPKGKGVKLSITE 250
>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 264
Score = 25.0 bits (52), Expect = 3.7
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Frame = +3
Query: 135 VSLGNGCICSFRKVAKSASGSTSRSVAILNTSHLKQLLGNRGRHNSSTTGSG-DQSN 302
+ L G + +S S S S ++N L HN STT G D SN
Sbjct: 30 IDLEKGLPLKYNSENESGLPSNSASSYLINPDPTMDLEAQTFNHNESTTSVGHDNSN 86
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 24.6 bits (51), Expect = 4.9
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +1
Query: 247 LGTGADTIPVPRGAGINLTVTEPHFPVTLQGTV*G 351
L A P G+G LT HFP G V G
Sbjct: 459 LSRSASISPTLSGSGSGLTPLSSHFPSAATGLVGG 493
>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 418
Score = 24.2 bits (50), Expect = 6.4
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +3
Query: 111 PQVRCQICVSLGNGCICSFRKVAKSASGSTSRSVAILNTSHL 236
P+ RC+ C LG G C R + S + VA T L
Sbjct: 368 PRWRCRWCNVLGTGTFCVRRGPEGNKSLCNACGVAYAKTGQL 409
>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 249
Score = 23.8 bits (49), Expect = 8.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 201 SRSVAILNTSHLKQLLGNRGR 263
SRS I+ +H + +LG +GR
Sbjct: 46 SRSEIIIRATHTQDVLGEKGR 66
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 23.8 bits (49), Expect = 8.5
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +1
Query: 259 ADTIPVPRGAGINLTVTEPHFPVTLQ 336
A ++ VP + TE HFP T +
Sbjct: 368 AQSVEVPENETNQIPTTEEHFPATTE 393
>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 413
Score = 23.8 bits (49), Expect = 8.5
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 203 QKCSNPEHQPFEATSWEQGQTQFQY 277
+KCS +H+P E + ++G QF +
Sbjct: 335 KKCSRFDHEPVEWSCAQKGIDQFAH 359
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,371,688
Number of Sequences: 5004
Number of extensions: 25720
Number of successful extensions: 88
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -