Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_F19
(367 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 140 3e-34
07_01_0756 + 5819367-5820038,5820847-5821005 138 1e-33
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 82 1e-16
09_04_0226 - 15859439-15860377 32 0.12
01_05_0739 + 24807181-24809121 30 0.48
06_03_0267 + 18970578-18972464 28 2.6
04_04_0114 + 22861300-22861476,22864952-22864969,22865187-22867163 28 2.6
05_05_0026 + 21645845-21647404 27 3.4
06_01_0275 + 2029542-2029689,2029777-2030295,2030657-2030754,203... 27 6.0
02_04_0335 + 22117902-22119869 27 6.0
12_01_0878 - 8420348-8420580,8420728-8420890 26 7.9
10_06_0024 - 9733994-9734093,9734814-9734870,9734954-9735040,973... 26 7.9
05_06_0286 + 26932395-26933155,26934287-26934407,26934496-269347... 26 7.9
02_01_0540 + 3948833-3948911,3948979-3949208 26 7.9
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 140 bits (339), Expect = 3e-34
Identities = 61/98 (62%), Positives = 75/98 (76%)
Frame = -3
Query: 365 NKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTG 186
NKIG+PHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG++D +TS+RGST
Sbjct: 155 NKIGQPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIEDVFTSSRGSTK 214
Query: 185 TLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSDF 72
TLGNF +LTPD WRD KSP+ ++
Sbjct: 215 TLGNFVKATFDCLMKTYGFLTPDFWRDTKFVKSPFQEY 252
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 138 bits (334), Expect = 1e-33
Identities = 60/98 (61%), Positives = 75/98 (76%)
Frame = -3
Query: 365 NKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTG 186
NKIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG++D +TS+RGST
Sbjct: 158 NKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAHVPKKVLQFAGIEDVFTSSRGSTK 217
Query: 185 TLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSDF 72
TLGNF +LTPD WR+ K+P+ ++
Sbjct: 218 TLGNFVKATFDCLMKTYGFLTPDFWRETRFIKTPFQEY 255
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 81.8 bits (193), Expect = 1e-16
Identities = 36/61 (59%), Positives = 47/61 (77%)
Frame = -3
Query: 353 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 174
KPHTV CKV K GSVTVR++ P G+ +V+ VPKK+L+ AG++D +TS+RGST TL N
Sbjct: 47 KPHTVSCKVADKYGSVTVRMMLPPMGSSVVATRVPKKVLKFAGIEDVFTSSRGSTKTLSN 106
Query: 173 F 171
F
Sbjct: 107 F 107
>09_04_0226 - 15859439-15860377
Length = 312
Score = 32.3 bits (70), Expect = 0.12
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -2
Query: 291 PRSPWYWNCVCPCSQEVASNGWCSGLLHFCSW--IHW 187
PR Y+ C+ PC SN + SG+ + SW + W
Sbjct: 187 PRRDLYYGCMVPCDYVRGSNEYMSGMGYLLSWDLVEW 223
>01_05_0739 + 24807181-24809121
Length = 646
Score = 30.3 bits (65), Expect = 0.48
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +3
Query: 108 SPQVRCQICVSLGNGCICSFRKVAKSASGST 200
S + R + CV G G C F AKSA GST
Sbjct: 474 SARGRTEYCVRHGGGKRCKFEGCAKSAQGST 504
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 132 CVSLGNGCICSFRKVAKSASGST 200
C+S G G C F + K A GST
Sbjct: 379 CISHGGGRRCQFPECTKGAQGST 401
>06_03_0267 + 18970578-18972464
Length = 628
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 108 SPQVRCQICVSLGNGCICSFRKVAKSASGST 200
S + R CV G G C F +KSA GST
Sbjct: 457 SARGRTDCCVRHGGGKRCQFTGCSKSAQGST 487
>04_04_0114 + 22861300-22861476,22864952-22864969,22865187-22867163
Length = 723
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 108 SPQVRCQICVSLGNGCICSFRKVAKSASGST 200
S + + +C+S G G C F +K A GST
Sbjct: 439 SAEGKAGLCISHGGGRRCQFPDCSKGAQGST 469
>05_05_0026 + 21645845-21647404
Length = 519
Score = 27.5 bits (58), Expect = 3.4
Identities = 9/31 (29%), Positives = 13/31 (41%)
Frame = -2
Query: 288 RSPWYWNCVCPCSQEVASNGWCSGLLHFCSW 196
R PW+ C CP + + W + C W
Sbjct: 47 RPPWW--CACPVCEAYVTASWAREFDNLCDW 75
>06_01_0275 +
2029542-2029689,2029777-2030295,2030657-2030754,
2031718-2032028,2032560-2032631,2032729-2033398
Length = 605
Score = 26.6 bits (56), Expect = 6.0
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +2
Query: 191 WIHEQKCSNPEHQPFEATSWEQGQTQ 268
W + ++P+H PFE + W+ Q
Sbjct: 69 WESDPATAHPQHLPFEPSGWDSDPPQ 94
>02_04_0335 + 22117902-22119869
Length = 655
Score = 26.6 bits (56), Expect = 6.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 108 SPQVRCQICVSLGNGCICSFRKVAKSASGST 200
S + R +C+S G G C + K A GST
Sbjct: 372 SAEGRVGLCISHGGGRRCQYPDCRKGAQGST 402
>12_01_0878 - 8420348-8420580,8420728-8420890
Length = 131
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 258 PCSQEVASNGWCSGLLHFCSWIHWHSWQL 172
P S+E + G GL + + + W WQL
Sbjct: 40 PMSEETSREGLRDGLGSWTTGLEWRQWQL 68
>10_06_0024 -
9733994-9734093,9734814-9734870,9734954-9735040,
9736438-9736982,9737086-9737271
Length = 324
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 229 AI*SNFLGTGADTIPVPRGAGINLTVTEPH 318
A+ S L T + I VPRG G +L V PH
Sbjct: 268 AVLSISLSTASLLIMVPRGIGSSLRVRTPH 297
>05_06_0286 +
26932395-26933155,26934287-26934407,26934496-26934772,
26934934-26935094
Length = 439
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 177 AKSASGSTSRSVAILNTSHLKQLLGNRGRHNSSTTGSG 290
A +A G+ S SVA+ T + G +SS G+G
Sbjct: 100 AGAADGACSSSVAVAGTGSISAARAGDGPFSSSVAGAG 137
>02_01_0540 + 3948833-3948911,3948979-3949208
Length = 102
Score = 26.2 bits (55), Expect = 7.9
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -2
Query: 270 NCVCPCSQEVASNGWCSGLLHFC 202
NC+ C+ E + G+C+ + H C
Sbjct: 51 NCIACCTNEGYTGGYCTTVRHKC 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,365,959
Number of Sequences: 37544
Number of extensions: 192916
Number of successful extensions: 578
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -