Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_F19
         (367 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   0.28 
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   1.1  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   2.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   4.6  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    20   8.0  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   8.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    20   8.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   8.0  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 25.0 bits (52), Expect = 0.28
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +2

Query: 170 QSCQECQWIHEQKCSNPEHQPFEATSWEQGQTQFQYHGERGSI*L*LNH 316
           Q    C W+ +Q C   E+   E T  + G  ++ +  +RG   L +NH
Sbjct: 461 QQGDTCCWVCDQ-CEEYEYVHDEYTCMDCGPGKWPHEDKRGCYQLAINH 508



 Score = 20.2 bits (40), Expect = 8.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 101 GYLSTSQVSNMRKSWQWL 154
           G L  ++ SN+ + +QWL
Sbjct: 211 GILEAARRSNLSQPFQWL 228


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 123 CQICVSLGNGCICSFRKVAKSASGSTSRSVAI 218
           C I  S  NGC+ + +   K A G+   SVAI
Sbjct: 172 CSISNSYTNGCVEALKDTVKLA-GTVFGSVAI 202


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -3

Query: 335 CKVTGKCGSVTVRLIPAPRGT 273
           C + G CG +   +   P+GT
Sbjct: 75  CPICGACGDIAHTVKYCPKGT 95


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
 Frame = -2

Query: 225 CSGLLHFCSWIHWHSWQLCESYICSH---CQDLRI 130
           CS + HF S  +  SWQ   S    H   C+ LRI
Sbjct: 73  CSDVHHFESSFNAQSWQRLTSLHELHVHGCKVLRI 107



 Score = 20.2 bits (40), Expect = 8.0
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +3

Query: 246 LGNRGRHNSSTTGSGDQSNCD*TTLSCDLARH 341
           L  R   + S    GD+S+C       DL+R+
Sbjct: 191 LNRRDSDDGSDGNDGDESSCRADIRILDLSRN 222


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 219 GLLHFCSWIHWHSWQ 175
           GLL+ C W+ + ++Q
Sbjct: 481 GLLNICYWVIYVTYQ 495


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 111 PQVRCQICVSLGNGCICSFRKVAKSASGSTS 203
           P   C +  S    C+ S + VAK A+  +S
Sbjct: 145 PPTTCLVFSSGSVSCVPSVKHVAKCATDFSS 175


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 101 GYLSTSQVSNMRKSWQWL 154
           G L  ++ SN+ + +QWL
Sbjct: 301 GILEAARRSNLSQPFQWL 318


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +2

Query: 167 SQSCQECQWIHEQKCSNPEHQPFEATS 247
           S SC       EQ  S P H P  +TS
Sbjct: 76  SSSCDPVPGNLEQIGSRPLHPPASSTS 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,314
Number of Sequences: 438
Number of extensions: 1903
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8680350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)