Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_F18
(362 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 114 5e-27
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 110 7e-26
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe... 27 0.68
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 27 1.2
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 25 2.7
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc... 25 3.6
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 25 3.6
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 25 4.8
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi... 25 4.8
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 24 6.3
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c... 24 6.3
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc... 24 8.3
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 24 8.3
>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 189
Score = 114 bits (274), Expect = 5e-27
Identities = 53/111 (47%), Positives = 76/111 (68%)
Frame = +2
Query: 29 KQIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFGS 208
+ I ++ + IPE ++V +K+RLVTVKGPRGVLK+N + + ++++ +K W GS
Sbjct: 3 RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKKQG-NTIKFIVWHGS 61
Query: 209 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNAIIEI 361
+K A +RT S + NMI GVT+GF+YKMR VYAHFPIN TE ++EI
Sbjct: 62 RKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEI 112
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 110 bits (264), Expect = 7e-26
Identities = 51/111 (45%), Positives = 75/111 (67%)
Frame = +2
Query: 29 KQIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFGS 208
+ I ++ + IP+ +TV +K+R VTV GPRG LK+N +H+ ++++ +K W GS
Sbjct: 3 RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKKQG-NTIKFIVWHGS 61
Query: 209 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNAIIEI 361
+K A +R+V S + NMI GVT+GF+YKMR VYAHFPIN TE ++EI
Sbjct: 62 RKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEI 112
>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 27.5 bits (58), Expect = 0.68
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 54 TFWFATICFILGLCLT 7
TFWF +IC IL +C +
Sbjct: 281 TFWFQSICLILYICFS 296
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 26.6 bits (56), Expect = 1.2
Identities = 14/63 (22%), Positives = 35/63 (55%)
Frame = +2
Query: 89 SRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFGSKKELAAVRTVCSHVENMIKG 268
S+L + + ++ RN + L++ ++VN +E W G + +AV T + ++++ +
Sbjct: 1111 SKLCNLLNDKNIVVRN-QSLSLFHQLVNKYPFLLESWIGLQLVQSAVNTNTADIDDLYRL 1169
Query: 269 VTK 277
++K
Sbjct: 1170 LSK 1172
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 25.4 bits (53), Expect = 2.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 222 ASSFLEPNHFSTFNWRGLTMRMSTAKCLKF 133
+SS PNH ++ RGLT ST K+
Sbjct: 278 SSSNTSPNHLASVPNRGLTSNSSTGSFTKY 307
>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 517
Score = 25.0 bits (52), Expect = 3.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 63 GIFTFWFATICFILGLCLTL 4
G+ WFA +CF G LT+
Sbjct: 276 GVVLIWFAWLCFNSGTLLTV 295
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 25.0 bits (52), Expect = 3.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 124 NSARTFHCHQTRFHMDGETLRNLH 53
+S R FH Q+ FH++G N++
Sbjct: 573 HSVRFFHAIQSHFHLEGPIRYNMN 596
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 24.6 bits (51), Expect = 4.8
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +2
Query: 137 FKHLAVDIRMVNPRQLKVEKWFGSKKELAAVRTVCSHVENMIKGVT-KGFQYKMRAVYAH 313
F H +VD+ + + E WF + T+CS + N++ VT + + M A+
Sbjct: 1594 FTHGSVDMLIEQNNLKQSEIWFVLNDFSLVLATICSCLGNLLNLVTDEDIENAMSALEGS 1653
Query: 314 FPINCVTTEGNA 349
+ TTE A
Sbjct: 1654 NAVQ-ATTESEA 1664
>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
Ran1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 470
Score = 24.6 bits (51), Expect = 4.8
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -2
Query: 313 MSVHCTHLVLESLGHTFDHVFDMRAYCPNSS*FFFRTE 200
+S H + L + T D ++ + YCPN F + TE
Sbjct: 72 VSSHPYIITLHRVLETEDAIYVVLQYCPNGDLFTYITE 109
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 24.2 bits (50), Expect = 6.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 235 SMLSCRKHDQRCDQGIPIQDACSVRS 312
S L+CR+ +CD G P + C RS
Sbjct: 22 SCLACRRKKLKCDHGRPCSN-CLKRS 46
>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 24.2 bits (50), Expect = 6.3
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -2
Query: 145 VFEVSF*NSARTFHCHQTRFHMDGETLRNLH 53
V E S N A+ FH R + G L NLH
Sbjct: 144 VIEFSSPNIAKPFHAGHLRSTIIGSFLANLH 174
>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 23.8 bits (49), Expect = 8.3
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -2
Query: 340 LSGDTVDREMSV-HCTHLVLESLGHTFDHVFDMRAY 236
L G +D S+ + L++L H D F+ +AY
Sbjct: 242 LQGQKIDNSESLPDILSITLDNLSHPTDEYFEAKAY 277
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 23.8 bits (49), Expect = 8.3
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = -2
Query: 346 VSLSGDTVDREMSVHCTHLVLESLGHTFDHVF 251
VS+ ++ D ++V+ +HL +E + HV+
Sbjct: 790 VSMESNSFDIPITVNLSHLTVEHMSIVLRHVY 821
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,507,181
Number of Sequences: 5004
Number of extensions: 28431
Number of successful extensions: 85
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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