Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_F18
         (362 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...   142   5e-35
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    33   0.061
AF100656-5|AAF99963.2|  259|Caenorhabditis elegans Hypothetical ...    27   3.0  
AF016676-3|AAG24101.2|  494|Caenorhabditis elegans Cytochrome p4...    27   3.0  
U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical pr...    27   4.0  
AF016449-15|AAG24002.1|  496|Caenorhabditis elegans Cytochrome p...    27   4.0  
U82936-1|AAB40869.1|  682|Caenorhabditis elegans protein kinase ...    26   7.0  
U82935-1|AAB40868.1|  680|Caenorhabditis elegans protein kinase ...    26   7.0  
U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase ...    26   7.0  
U29376-4|AAM51504.1|  682|Caenorhabditis elegans Protein kinase ...    26   7.0  
U29376-3|AAM51503.1|  680|Caenorhabditis elegans Protein kinase ...    26   7.0  
Z81484-3|CAB03971.1|  346|Caenorhabditis elegans Hypothetical pr...    26   9.3  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score =  142 bits (345), Expect = 5e-35
 Identities = 62/112 (55%), Positives = 84/112 (75%)
 Frame = +2

Query: 26  MKQIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFG 205
           MK I +N  V  PE +T  VK+R+V V GPRG ++++F+HL +++  +    L+V KWFG
Sbjct: 1   MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFG 60

Query: 206 SKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNAIIEI 361
            +KELAA+RTVCSH++NMIKGVT GF+YKMR+VYAHFPIN    +GN  +EI
Sbjct: 61  VRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEI 112


>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
           protein Y47G6A.29 protein.
          Length = 2460

 Score = 33.1 bits (72), Expect = 0.061
 Identities = 17/63 (26%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
 Frame = +2

Query: 143 HLAVDIRMVNPRQLKVEKWFGSKKELAAVRTVC---SHVENMIKGVT--KGFQYKMRAVY 307
           H+  D++++  ++  ++ WF   ++L ++RT C   S ++  I  +T  KGF + M+A +
Sbjct: 361 HVKHDVKIILTKETCMDIWFMRGEQLESIRTRCGPLSSLDMSILWITTEKGFYWNMKAEF 420

Query: 308 AHF 316
            +F
Sbjct: 421 LNF 423


>AF100656-5|AAF99963.2|  259|Caenorhabditis elegans Hypothetical
           protein F49F1.6 protein.
          Length = 259

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 226 C*DSMLSCRKHDQRCDQGIPIQDACSVRSFPYQLCH 333
           C DSM++C     +CDQG  +Q  C    +   +CH
Sbjct: 21  CEDSMITCPDLKDQCDQGF-VQSQC---PYTCGICH 52


>AF016676-3|AAG24101.2|  494|Caenorhabditis elegans Cytochrome p450
           family protein 33C5 protein.
          Length = 494

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 81  WTVRLSGIFTFWFATICFIL 22
           WT +  G++TFW   I +++
Sbjct: 54  WTKQFGGVYTFWMGNIPYVI 73


>U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical
           protein T20B12.3 protein.
          Length = 504

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -3

Query: 276 LVTPLIMFST*EHTVLTAASSFLEPNHFSTFNWRGLTMRMSTAKCL 139
           L  P +++ + + ++LT   SFL   H  T+       R+S  +CL
Sbjct: 275 LTNPSLLYMSQKESILTLLDSFLSSTHLPTYITASFLKRLS--RCL 318


>AF016449-15|AAG24002.1|  496|Caenorhabditis elegans Cytochrome p450
           family protein 33C9 protein.
          Length = 496

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -3

Query: 117 RGPFTVTKRDFTWTVRLSGIFTFWFATICFIL 22
           R P    K    WT +   I+TFW  T  +IL
Sbjct: 42  RNPAPGYKAFARWTAKYGDIYTFWLGTRPYIL 73


>U82936-1|AAB40869.1|  682|Caenorhabditis elegans protein kinase C2
           B isoform protein.
          Length = 682

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 233 TVCSHVENMIKGVTK-GFQYKMRAVYAH 313
           T CSH ++ + G+TK GFQ ++  +  H
Sbjct: 50  TFCSHCKDFLWGITKQGFQCQVCTLVVH 77


>U82935-1|AAB40868.1|  680|Caenorhabditis elegans protein kinase C2
           A isoform protein.
          Length = 680

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 233 TVCSHVENMIKGVTK-GFQYKMRAVYAH 313
           T CSH ++ + G+TK GFQ ++  +  H
Sbjct: 50  TFCSHCKDFLWGITKQGFQCQVCTLVVH 77


>U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase c
           protein 2, isoformc protein.
          Length = 936

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 233 TVCSHVENMIKGVTK-GFQYKMRAVYAH 313
           T CSH ++ + G+TK GFQ ++  +  H
Sbjct: 190 TFCSHCKDFLWGITKQGFQCQVCTLVVH 217


>U29376-4|AAM51504.1|  682|Caenorhabditis elegans Protein kinase c
           protein 2, isoformb protein.
          Length = 682

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 233 TVCSHVENMIKGVTK-GFQYKMRAVYAH 313
           T CSH ++ + G+TK GFQ ++  +  H
Sbjct: 50  TFCSHCKDFLWGITKQGFQCQVCTLVVH 77


>U29376-3|AAM51503.1|  680|Caenorhabditis elegans Protein kinase c
           protein 2, isoforma protein.
          Length = 680

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 233 TVCSHVENMIKGVTK-GFQYKMRAVYAH 313
           T CSH ++ + G+TK GFQ ++  +  H
Sbjct: 50  TFCSHCKDFLWGITKQGFQCQVCTLVVH 77


>Z81484-3|CAB03971.1|  346|Caenorhabditis elegans Hypothetical
           protein C47A10.6 protein.
          Length = 346

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 313 MSVHCTHLVLESLGHTFDHVFDMRAY 236
           M +HC  L++  +   F H+FD+  Y
Sbjct: 63  MKIHCAALLIHCVPRFFLHLFDLYYY 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,387,457
Number of Sequences: 27780
Number of extensions: 162779
Number of successful extensions: 443
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)