Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_F17
         (186 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ...    25   1.7  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    23   5.3  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    23   7.0  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    23   7.0  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         22   9.3  
SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||M...    22   9.3  

>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
           Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 150 FSYALHIM*NVYYDKETFYSLTL 82
           FS+ LHIM N Y  ++   +LT+
Sbjct: 526 FSFQLHIMSNSYVGEDVISNLTM 548


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 167 LPKPHSSHTPYILCKTYIMTRRHFIHSLSSRSFVGSLV 54
           +PK     T  ILC TYI T   + +S  ++S + +L+
Sbjct: 234 IPKASLYDTVLILCSTYIST---YSYSKLAQSVIFNLI 268


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 152 SSHTPYILCKTYIMTRRHFIHSLSSRSFVGSLVR 51
           SSH  Y   K Y+M     +H +S    + S+V+
Sbjct: 452 SSHLDYSTFKNYLMPLAITLHFISEELRLDSVVK 485


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 105 ETFYSLTLQPFFRRFTRSSNSIDFFS 28
           ET YSL++ P F     +S  +  FS
Sbjct: 788 ETKYSLSVMPLFESSHLASTPVSHFS 813


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -2

Query: 146 HTPYILCKTYIMTRRHFIHSLSSRSFVGSLVRQIQSTFFLIKS 18
           H+   +   ++MT +H    LSS ++  S++  I    FL  S
Sbjct: 33  HSFMFVKSLHLMTSQHIFKCLSSCNYALSILHNICLASFLYLS 75


>SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 360

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 99 FYSLTL-QPFFRRFTRSSNSIDFFSY 25
          F+S+ L QPF  +  RSSN  DF S+
Sbjct: 10 FFSVALCQPFLFQ-KRSSNISDFISF 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 682,363
Number of Sequences: 5004
Number of extensions: 9906
Number of successful extensions: 21
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 42
effective length of database: 2,152,310
effective search space used: 40893890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)