Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_F17
         (186 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0072 - 15721866-15723563                                         27   2.1  
01_04_0070 - 15704794-15706491                                         27   2.1  
08_01_0075 - 533839-534642,534653-534706,534890-534961,535377-53...    26   4.9  
11_06_0437 - 23533218-23536382                                         25   6.5  
08_02_1424 + 26982502-26983572,26984129-26984908,26988299-26990128     25   6.5  
02_05_0442 - 29044736-29046604                                         25   8.5  

>01_04_0072 - 15721866-15723563
          Length = 565

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = -1

Query: 183 LHLILITKTTQFSYALHIM*NVYYDKETFYSLTLQPFFRRFTRSSNSIDFF 31
           L + L+T  T F     I   +YY+ + +Y + ++   + F +  N  +F+
Sbjct: 349 LTVSLVTFLTVFCIFFAITDTIYYNGKVYYGVAMRGGLKIFNKEDNDPNFY 399


>01_04_0070 - 15704794-15706491
          Length = 565

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = -1

Query: 183 LHLILITKTTQFSYALHIM*NVYYDKETFYSLTLQPFFRRFTRSSNSIDFF 31
           L + L+T  T F     I   +YY+ + +Y + ++   + F +  N  +F+
Sbjct: 349 LTVSLVTFLTVFCIFFAITDTIYYNGKVYYGVAMRGGLKIFNKEDNDPNFY 399


>08_01_0075 -
           533839-534642,534653-534706,534890-534961,535377-535379
          Length = 310

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -2

Query: 158 PHSSHTPYILCKTYIMTRRHFIHSLSSRSFVGSLVRQIQSTFFLI 24
           PH   T  +  +      RH+IH+  SRS+ G L+     TFF I
Sbjct: 92  PHMETTAALCLENAPSYHRHYIHTAGSRSY-GYLMAD-GHTFFAI 134


>11_06_0437 - 23533218-23536382
          Length = 1054

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 167 LPKPHSSHTPYILCKTYIMTRRHFIHSLSSRSFVG 63
           L +P  SH  +I CK + + R+   H      FVG
Sbjct: 502 LLQPDGSHFDHIRCKIHDLLRQLAFHLSRQECFVG 536


>08_02_1424 + 26982502-26983572,26984129-26984908,26988299-26990128
          Length = 1226

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 95  IHSLSSRSFVGSLVRQIQS 39
           +HS  +  F+GSLVRQ ++
Sbjct: 226 MHSFDANQFIGSLVRQFKA 244


>02_05_0442 - 29044736-29046604
          Length = 622

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 167 LPKPHSSHTPYILCKTYIMTRRHFI 93
           LP P SS    +LC  Y+ T ++ +
Sbjct: 194 LPSPASSGDDPVLCSRYVQTYKYLV 218


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,884,529
Number of Sequences: 37544
Number of extensions: 50074
Number of successful extensions: 93
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 14,793,348
effective HSP length: 41
effective length of database: 13,254,044
effective search space used: 265080880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)