Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_F17
         (186 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039051-8|AAB94268.3|  309|Caenorhabditis elegans Serpentine re...    30   0.25 
AF039051-7|AAB94267.2|  304|Caenorhabditis elegans Serpentine re...    28   1.0  
AC084158-26|AAM15621.2|  216|Caenorhabditis elegans Hypothetical...    25   7.1  
AC084158-25|AAM15620.2|  384|Caenorhabditis elegans Hypothetical...    25   7.1  

>AF039051-8|AAB94268.3|  309|Caenorhabditis elegans Serpentine
           receptor, class x protein7 protein.
          Length = 309

 Score = 29.9 bits (64), Expect = 0.25
 Identities = 16/29 (55%), Positives = 17/29 (58%)
 Frame = -1

Query: 111 DKETFYSLTLQPFFRRFTRSSNSIDFFSY 25
           DK TFY+    PFF     SSNSI F SY
Sbjct: 248 DKPTFYAAV--PFFITLNGSSNSIIFLSY 274


>AF039051-7|AAB94267.2|  304|Caenorhabditis elegans Serpentine
           receptor, class x protein8 protein.
          Length = 304

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = -1

Query: 111 DKETFYSLTLQPFFRRFTRSSNSIDFFSY 25
           DK  FY  T+ PFF     SSNSI F +Y
Sbjct: 248 DKPIFY--TVVPFFITLNGSSNSIIFLTY 274


>AC084158-26|AAM15621.2|  216|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.32b protein.
          Length = 216

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 110 TRRHFIHSLSSRSFVGSLVRQIQST 36
           T   F HS+SSR FV  +V + +++
Sbjct: 102 TSEEFAHSVSSREFVTDIVHKTKNS 126


>AC084158-25|AAM15620.2|  384|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.32a protein.
          Length = 384

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 110 TRRHFIHSLSSRSFVGSLVRQIQST 36
           T   F HS+SSR FV  +V + +++
Sbjct: 270 TSEEFAHSVSSREFVTDIVHKTKNS 294


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,667,665
Number of Sequences: 27780
Number of extensions: 52668
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 12,740,198
effective HSP length: 42
effective length of database: 11,573,438
effective search space used: 219895322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)