Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_F16
         (192 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0332 - 16843295-16843356,16843884-16846656                       26   3.7  
06_01_1166 + 9931955-9933406                                           26   4.9  
06_01_1168 - 9949128-9950621                                           25   8.5  

>10_08_0332 - 16843295-16843356,16843884-16846656
          Length = 944

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = -1

Query: 123 TYTKINSKIQPSY*ASFICMFESASFISNSSEAYNLKFPSC 1
           TY  IN         S  C   S  F+  S+  +N + PSC
Sbjct: 631 TYLSINGNSISGNLDSTFCKLSSLQFLDLSNNRFNGELPSC 671


>06_01_1166 + 9931955-9933406
          Length = 483

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -1

Query: 141 QITQ*FTYTKINSKIQPSY*ASFICMFESASFISNS 34
           QIT+ +   K + +I   + ++F+   ES+SF+SN+
Sbjct: 194 QITRTYRTYKKSDEIAEGFKSNFLWNLESSSFVSNT 229


>06_01_1168 - 9949128-9950621
          Length = 497

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -1

Query: 141 QITQ*FTYTKINSKIQPSY*ASFICMFESASFISNS 34
           Q+T+ +   K   +I   + ++F+   ES+SF+SN+
Sbjct: 200 QLTRAYRTHKKGDEIDEGFKSNFLWNLESSSFVSNT 235


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,585,014
Number of Sequences: 37544
Number of extensions: 43202
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 14,793,348
effective HSP length: 43
effective length of database: 13,178,956
effective search space used: 263579120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)