Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_F16
         (192 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69661-2|CAA93494.1|  925|Caenorhabditis elegans Hypothetical pr...    26   4.3  
Z50873-1|CAA90760.2|  961|Caenorhabditis elegans Hypothetical pr...    25   5.6  
X92564-1|CAA63314.1|  961|Caenorhabditis elegans LIN-2A protein.       25   5.6  
AL031633-9|CAA21023.1|  636|Caenorhabditis elegans Hypothetical ...    25   7.4  

>Z69661-2|CAA93494.1|  925|Caenorhabditis elegans Hypothetical
           protein F48F7.4 protein.
          Length = 925

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 99  IQPSY*ASFICMFESASFISNSSEAYNLKFPSC 1
           +Q  Y + F C+F+ A+ I   S+  NLK   C
Sbjct: 131 LQSQYISVFCCVFQFANQILLQSDGLNLKHFKC 163


>Z50873-1|CAA90760.2|  961|Caenorhabditis elegans Hypothetical
           protein F17E5.1a protein.
          Length = 961

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -2

Query: 80  RHLYVCLKARLLSAIHLKHII 18
           +H Y+C   + ++++H +HII
Sbjct: 75  QHPYICRLEKTINSVHYRHII 95


>X92564-1|CAA63314.1|  961|Caenorhabditis elegans LIN-2A protein.
          Length = 961

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -2

Query: 80  RHLYVCLKARLLSAIHLKHII 18
           +H Y+C   + ++++H +HII
Sbjct: 75  QHPYICRLEKTINSVHYRHII 95


>AL031633-9|CAA21023.1|  636|Caenorhabditis elegans Hypothetical
           protein Y39A1A.12 protein.
          Length = 636

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 101 LLFILVYVNYCVIC 142
           ++F  +Y NYC+IC
Sbjct: 556 IIFANIYKNYCIIC 569


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,561,597
Number of Sequences: 27780
Number of extensions: 48172
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 12,740,198
effective HSP length: 43
effective length of database: 11,545,658
effective search space used: 230913160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)