Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_F16
         (192 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    20   2.3  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    20   2.3  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    19   5.4  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    19   5.4  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    19   7.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    19   7.1  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    19   7.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    18   9.4  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -1

Query: 126 FTYTKINSKIQPSY*ASFICMFES 55
           F++ +  +K+QP+Y      ++ES
Sbjct: 26  FSFLRTRTKLQPTYFHHTYIIYES 49


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -1

Query: 126 FTYTKINSKIQPSY*ASFICMFES 55
           F++ +  +K+QP+Y      ++ES
Sbjct: 26  FSFLRTRTKLQPTYFHHTYIIYES 49


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
          transcriptase protein.
          Length = 127

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +2

Query: 38 LLIKDALSNIH 70
          +LIKD   N+H
Sbjct: 46 ILIKDLFDNVH 56


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
          transcriptase protein.
          Length = 110

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +2

Query: 38 LLIKDALSNIH 70
          +LIKD   N+H
Sbjct: 29 ILIKDLFDNVH 39


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 6/22 (27%), Positives = 11/22 (50%)
 Frame = -1

Query: 66  MFESASFISNSSEAYNLKFPSC 1
           +F+S  +I +    Y+   P C
Sbjct: 315 VFQSTQYIRHIKSPYHTPEPDC 336


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 98  ILLFILVYVNYCVIC 142
           I LF+++ V Y + C
Sbjct: 213 IPLFVMIQVYYKIFC 227


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -2

Query: 173 KYYCYTFKN 147
           K YC T+KN
Sbjct: 64  KKYCETYKN 72


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +1

Query: 55  AFKHTYK*RLVTRLNLTIYFSV 120
           A+ +TYK    T  ++T Y  +
Sbjct: 208 AYLNTYKGDFPTETDITFYIII 229


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,059
Number of Sequences: 438
Number of extensions: 644
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 43
effective length of database: 127,509
effective search space used:  2550180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)