Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_F14
         (211 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    25   1.4  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   1.8  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    23   4.2  
SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces...    23   5.5  
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    23   5.5  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    22   9.6  
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch...    22   9.6  

>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 95  VFLSCSIYYGIWYV*PGYSYLIKFSS 18
           ++LSC  YY I Y+     YL+ F S
Sbjct: 265 LWLSCHFYYSIIYLLNSMFYLLTFYS 290


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 26   ILLNNCNPVTRTIFRNKLNSSEKH 97
            I L +CNP    +F + L  SE H
Sbjct: 1414 IQLKDCNPQDNVVFLDVLEYSENH 1437


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 44  NPVTRTIFRNKLNSSEKH 97
           NP  RTI +N+ + +E+H
Sbjct: 121 NPYIRTIIKNRRDYAERH 138


>SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 257

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
 Frame = -3

Query: 128 CYFLHLFFQPYVFLSCSIYYGIWYV-----*PGYSYLIKFSS 18
           CYF HL   P+ F   +  + I +V      P YS L   +S
Sbjct: 170 CYFKHLPLLPWTFTVEACLFSIQFVLDRNNGPSYSLLASLAS 211


>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -3

Query: 134 NNCYFLHLFFQPYVFLSCSIYYGIWY 57
           N C + H +++ Y  L+ S Y   W+
Sbjct: 226 NLCLWNHAYYKDYGLLNRSRYIDTWF 251


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 44  NPVTRTIFRNKLNSSEKHMAE 106
           +P+T TIF N+  S  + M +
Sbjct: 730 DPITMTIFANRFMSISEQMGQ 750


>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 167 YGDEISENKNKNNCY 123
           +GD+IS + N ++CY
Sbjct: 98  HGDDISTDANGDDCY 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 713,428
Number of Sequences: 5004
Number of extensions: 10155
Number of successful extensions: 24
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 49
effective length of database: 2,117,282
effective search space used: 42345640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)