Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_F12
         (340 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   2.6  
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    20   8.0  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    20   8.0  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 212 EDRNRRRKKTATAEERRPQPSKKEGAGREKT 304
           ED+++ + K     E   + +KKE   ++KT
Sbjct: 238 EDKDKDKPKIEDVGEDEDEDTKKEDKKKKKT 268


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 150 QPPKKEDCNRRRNEDCNLRRKKTATAEER 236
           +P + E C+R+  +  NLRR       ER
Sbjct: 36  RPYRCEHCDRQFVQVANLRRHLRVHTGER 64


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 150 QPPKKEDCNRRRNEDCNLRRKKTATAEER 236
           +P + E C+R+  +  NLRR       ER
Sbjct: 189 RPYRCEHCDRQFVQVANLRRHLRVHTGER 217


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.314    0.126    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,863
Number of Sequences: 336
Number of extensions: 1217
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6558670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.2 bits)